miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 60132 1.11 0.000577
Target:  5'- gGCCAGCGACGGCCGCGAGUACAACCGg -3'
miRNA:   3'- -CGGUCGCUGCCGGCGCUCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 5069 0.86 0.03739
Target:  5'- gGCCcGCGGCGGCgGCGcGUGCGACCGg -3'
miRNA:   3'- -CGGuCGCUGCCGgCGCuCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 5178 0.82 0.067526
Target:  5'- gGCCGGCGucGCGGgCGCGGGcGCGGCCGg -3'
miRNA:   3'- -CGGUCGC--UGCCgGCGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 29643 0.8 0.09416
Target:  5'- uGCCGGCGACGGCCGgCGGGUA-GACg- -3'
miRNA:   3'- -CGGUCGCUGCCGGC-GCUCAUgUUGgc -5'
23869 5' -57.7 NC_005262.1 + 10501 0.78 0.127069
Target:  5'- cGCCAGCauGGCGGCCagcagcagcGCGGGgGCGGCCGa -3'
miRNA:   3'- -CGGUCG--CUGCCGG---------CGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 6644 0.76 0.170351
Target:  5'- cGCCGGgGAugucgaccgacaCGGCCGCGAuGUACucGCCGg -3'
miRNA:   3'- -CGGUCgCU------------GCCGGCGCU-CAUGu-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 46397 0.75 0.203322
Target:  5'- cCCAGCGucucggcauuguCGGCCGcCGAGU-CGACCGg -3'
miRNA:   3'- cGGUCGCu-----------GCCGGC-GCUCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 54553 0.75 0.209686
Target:  5'- gGCCAGCGACGucGCCGCGuucGCGAgCGa -3'
miRNA:   3'- -CGGUCGCUGC--CGGCGCucaUGUUgGC- -5'
23869 5' -57.7 NC_005262.1 + 11581 0.75 0.220675
Target:  5'- uGCCGGCGGCGGCCaGCGcucGaGCGACUu -3'
miRNA:   3'- -CGGUCGCUGCCGG-CGCu--CaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 10548 0.75 0.220675
Target:  5'- uGCCGacGCGAcCGGCCGCGc--GCAGCCGc -3'
miRNA:   3'- -CGGU--CGCU-GCCGGCGCucaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 22397 0.74 0.238074
Target:  5'- uGCCGGCGccgacgaugaaGCGGUCGCGuaGGU-CAGCCGu -3'
miRNA:   3'- -CGGUCGC-----------UGCCGGCGC--UCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 239 0.74 0.238074
Target:  5'- cGCCGGCGGCGGCgggacauuucgCGCGGacGUACAcgcGCUGa -3'
miRNA:   3'- -CGGUCGCUGCCG-----------GCGCU--CAUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 43822 0.74 0.244124
Target:  5'- -gCGGCGAcaCGGCCGCGGGc-CGGCCGc -3'
miRNA:   3'- cgGUCGCU--GCCGGCGCUCauGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 15723 0.74 0.250301
Target:  5'- cGCCgGGCGGCucGUCGCGgcaGGUGCGACCGa -3'
miRNA:   3'- -CGG-UCGCUGc-CGGCGC---UCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 50293 0.73 0.269608
Target:  5'- aGCCcGUGACGGCCGCGcGGaUugAggaGCCGg -3'
miRNA:   3'- -CGGuCGCUGCCGGCGC-UC-AugU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 41565 0.73 0.283134
Target:  5'- gGCCGGCGugGGCgGC----GCGGCCGu -3'
miRNA:   3'- -CGGUCGCugCCGgCGcucaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 52633 0.73 0.289394
Target:  5'- cGUCGGCGuugucgcAgGGCCGCccGUGCGACCGg -3'
miRNA:   3'- -CGGUCGC-------UgCCGGCGcuCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 50041 0.72 0.304422
Target:  5'- aGCCGGCGcCGGCUGCucccGAG-ACGaaGCCGg -3'
miRNA:   3'- -CGGUCGCuGCCGGCG----CUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 23212 0.72 0.326917
Target:  5'- cGCCAccgucagcGCGACGGUCGCG-GcACcGCCGg -3'
miRNA:   3'- -CGGU--------CGCUGCCGGCGCuCaUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 7648 0.71 0.342586
Target:  5'- cGCCggcGGCGACGGCuaucucCGCGAGcgGCAcGCCa -3'
miRNA:   3'- -CGG---UCGCUGCCG------GCGCUCa-UGU-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.