miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 13949 0.7 0.418684
Target:  5'- uGCCGGagaaGAUGaGCCGCuGGUGCAccaggggGCCGg -3'
miRNA:   3'- -CGGUCg---CUGC-CGGCGcUCAUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 49754 0.71 0.36709
Target:  5'- cGCCGGCGGCGcCCGCgcccGAGgcucCGGCCGc -3'
miRNA:   3'- -CGGUCGCUGCcGGCG----CUCau--GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 50353 0.71 0.36709
Target:  5'- cGCCcGCGACGaCCGCGAGcgGCGcauucgucgACCGu -3'
miRNA:   3'- -CGGuCGCUGCcGGCGCUCa-UGU---------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 60169 0.71 0.384083
Target:  5'- cGCCgugaaGGCGcuCGGCCaGUGGGcgGCAACCGg -3'
miRNA:   3'- -CGG-----UCGCu-GCCGG-CGCUCa-UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 17565 0.7 0.40159
Target:  5'- aGCC-GCGGCGGCgCGCGA----AGCCGa -3'
miRNA:   3'- -CGGuCGCUGCCG-GCGCUcaugUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 43013 0.7 0.405151
Target:  5'- gGCCAGUucuuCGGCCGCuaccucgccagcuacGAGUACAucgacccgGCCGg -3'
miRNA:   3'- -CGGUCGcu--GCCGGCG---------------CUCAUGU--------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 56914 0.7 0.409632
Target:  5'- cGCCGGCGAgaucaaGGCCGCGcucgagaAGcGCAcGCCGa -3'
miRNA:   3'- -CGGUCGCUg-----CCGGCGC-------UCaUGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 4575 0.7 0.410531
Target:  5'- cGCCAGCGGCGGCgcugcucgggCGUGAGcGC--CCGc -3'
miRNA:   3'- -CGGUCGCUGCCG----------GCGCUCaUGuuGGC- -5'
23869 5' -57.7 NC_005262.1 + 24199 0.7 0.410531
Target:  5'- cGCCcgaGGCGGCaGCCGCGAcGcUGC-GCCGg -3'
miRNA:   3'- -CGG---UCGCUGcCGGCGCU-C-AUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 30858 0.71 0.36709
Target:  5'- cGUCGGgaUGACGGCCGagGAGUcgccgaGCGGCCGg -3'
miRNA:   3'- -CGGUC--GCUGCCGGCg-CUCA------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 17166 0.71 0.342586
Target:  5'- gGCCGGCaaGGCcGCgCGCGAGgacGCGACCGc -3'
miRNA:   3'- -CGGUCG--CUGcCG-GCGCUCa--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 7648 0.71 0.342586
Target:  5'- cGCCggcGGCGACGGCuaucucCGCGAGcgGCAcGCCa -3'
miRNA:   3'- -CGG---UCGCUGCCG------GCGCUCa-UGU-UGGc -5'
23869 5' -57.7 NC_005262.1 + 5178 0.82 0.067526
Target:  5'- gGCCGGCGucGCGGgCGCGGGcGCGGCCGg -3'
miRNA:   3'- -CGGUCGC--UGCCgGCGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 10501 0.78 0.127069
Target:  5'- cGCCAGCauGGCGGCCagcagcagcGCGGGgGCGGCCGa -3'
miRNA:   3'- -CGGUCG--CUGCCGG---------CGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 54553 0.75 0.209686
Target:  5'- gGCCAGCGACGucGCCGCGuucGCGAgCGa -3'
miRNA:   3'- -CGGUCGCUGC--CGGCGCucaUGUUgGC- -5'
23869 5' -57.7 NC_005262.1 + 11581 0.75 0.220675
Target:  5'- uGCCGGCGGCGGCCaGCGcucGaGCGACUu -3'
miRNA:   3'- -CGGUCGCUGCCGG-CGCu--CaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 10548 0.75 0.220675
Target:  5'- uGCCGacGCGAcCGGCCGCGc--GCAGCCGc -3'
miRNA:   3'- -CGGU--CGCU-GCCGGCGCucaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 43822 0.74 0.244124
Target:  5'- -gCGGCGAcaCGGCCGCGGGc-CGGCCGc -3'
miRNA:   3'- cgGUCGCU--GCCGGCGCUCauGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 50293 0.73 0.269608
Target:  5'- aGCCcGUGACGGCCGCGcGGaUugAggaGCCGg -3'
miRNA:   3'- -CGGuCGCUGCCGGCGC-UC-AugU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 50041 0.72 0.304422
Target:  5'- aGCCGGCGcCGGCUGCucccGAG-ACGaaGCCGg -3'
miRNA:   3'- -CGGUCGCuGCCGGCG----CUCaUGU--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.