miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 19385 0.66 0.673854
Target:  5'- cGCCAucGUGuGCGGCgCGCGGGUGguAUCc -3'
miRNA:   3'- -CGGU--CGC-UGCCG-GCGCUCAUguUGGc -5'
23869 5' -57.7 NC_005262.1 + 26989 0.67 0.610174
Target:  5'- cGCCAGUcACGGCCGU---UGCAGCa- -3'
miRNA:   3'- -CGGUCGcUGCCGGCGcucAUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 18352 0.67 0.600631
Target:  5'- cGCCGGCGAUGGUUcCGAGcccgcccauaagccCGGCCGa -3'
miRNA:   3'- -CGGUCGCUGCCGGcGCUCau------------GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60132 1.11 0.000577
Target:  5'- gGCCAGCGACGGCCGCGAGUACAACCGg -3'
miRNA:   3'- -CGGUCGCUGCCGGCGCUCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 27476 0.66 0.652674
Target:  5'- uGCCGGCGAgcgcacCGGCCccccacCGAaGU-CGACCGa -3'
miRNA:   3'- -CGGUCGCU------GCCGGc-----GCU-CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 19102 0.66 0.649489
Target:  5'- cGCgCGGCGAugccacguucggauCGGgCGCGGGcGCGucGCCGg -3'
miRNA:   3'- -CG-GUCGCU--------------GCCgGCGCUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 3177 0.66 0.642053
Target:  5'- cGCCAGCGuGCGcauggcguucGCCGUGcccuGUAUcGCCGg -3'
miRNA:   3'- -CGGUCGC-UGC----------CGGCGCu---CAUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 41664 0.66 0.642053
Target:  5'- aGCC-GCGGCGGCCaGaCGAuUGcCGGCCa -3'
miRNA:   3'- -CGGuCGCUGCCGG-C-GCUcAU-GUUGGc -5'
23869 5' -57.7 NC_005262.1 + 30880 0.66 0.631423
Target:  5'- cGCUGGCGAgcGUCGCGcGUGCGacGCCGc -3'
miRNA:   3'- -CGGUCGCUgcCGGCGCuCAUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 30420 0.67 0.610174
Target:  5'- gGgCGGCGucgacgaucACGGCCgGCGGGUuguCGAUCGg -3'
miRNA:   3'- -CgGUCGC---------UGCCGG-CGCUCAu--GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 41378 0.66 0.63036
Target:  5'- uGCCGGCGAgcaGGCgGCGcucgaucAGUGCgAACgCGg -3'
miRNA:   3'- -CGGUCGCUg--CCGgCGC-------UCAUG-UUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 3246 0.66 0.64099
Target:  5'- cGCCGGCGucagcgugcccuuGCGGUCGa-AGU-CGACCGu -3'
miRNA:   3'- -CGGUCGC-------------UGCCGGCgcUCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 39233 0.66 0.672798
Target:  5'- -aCGGCGACGGaCGCGAucaGCAggaucacGCCGg -3'
miRNA:   3'- cgGUCGCUGCCgGCGCUca-UGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 63715 0.66 0.620794
Target:  5'- aGCguGCGgcGCGGCCgacuucuucGCGAGccGCGGCCu -3'
miRNA:   3'- -CGguCGC--UGCCGG---------CGCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 12429 0.66 0.663278
Target:  5'- gGCCGGCGucGCGGaCgGCGcGGUGCcgAGCUGc -3'
miRNA:   3'- -CGGUCGC--UGCC-GgCGC-UCAUG--UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 8954 0.66 0.642053
Target:  5'- aGCCGGuCGGCGcGCUGCGuGU-CGGuCCa -3'
miRNA:   3'- -CGGUC-GCUGC-CGGCGCuCAuGUU-GGc -5'
23869 5' -57.7 NC_005262.1 + 33658 0.67 0.61442
Target:  5'- cGCCGGCGcuucggcgaccagcaGCGGCacgauCGUGGGcuucgcgGCGGCCGg -3'
miRNA:   3'- -CGGUCGC---------------UGCCG-----GCGCUCa------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 59116 0.67 0.608052
Target:  5'- uGCC-GCGGCccgauccGGCCGCGGcauggcuGUuCAACCGa -3'
miRNA:   3'- -CGGuCGCUG-------CCGGCGCU-------CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 45951 0.66 0.662218
Target:  5'- aGCUGuCGACGGCCGCGuuuccaucucgccAGUu--GCCGg -3'
miRNA:   3'- -CGGUcGCUGCCGGCGC-------------UCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 17339 0.66 0.642053
Target:  5'- gGCCGGCG-CGGCauuCGGGUcCGGCgCGg -3'
miRNA:   3'- -CGGUCGCuGCCGgc-GCUCAuGUUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.