miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 17166 0.71 0.342586
Target:  5'- gGCCGGCaaGGCcGCgCGCGAGgacGCGACCGc -3'
miRNA:   3'- -CGGUCG--CUGcCG-GCGCUCa--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 4090 0.71 0.350621
Target:  5'- uGCCGGCGACGuagcgcCCGCGuGgcgGCAcGCCGa -3'
miRNA:   3'- -CGGUCGCUGCc-----GGCGCuCa--UGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 30858 0.71 0.36709
Target:  5'- cGUCGGgaUGACGGCCGagGAGUcgccgaGCGGCCGg -3'
miRNA:   3'- -CGGUC--GCUGCCGGCg-CUCA------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 58771 0.71 0.36709
Target:  5'- gGCCGGCGAgcaaCuGCCGCugGAG-GCAGCCGa -3'
miRNA:   3'- -CGGUCGCU----GcCGGCG--CUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 49754 0.71 0.36709
Target:  5'- cGCCGGCGGCGcCCGCgcccGAGgcucCGGCCGc -3'
miRNA:   3'- -CGGUCGCUGCcGGCG----CUCau--GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 28613 0.71 0.36709
Target:  5'- gGCCAcGCGGCGGUCGUGAccuCAuuGCCGc -3'
miRNA:   3'- -CGGU-CGCUGCCGGCGCUcauGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 50353 0.71 0.36709
Target:  5'- cGCCcGCGACGaCCGCGAGcgGCGcauucgucgACCGu -3'
miRNA:   3'- -CGGuCGCUGCcGGCGCUCa-UGU---------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 52263 0.71 0.383221
Target:  5'- aGCCGGCGAgCGGCCGagucgcauGUucaggcacacgauGCAGCCGa -3'
miRNA:   3'- -CGGUCGCU-GCCGGCgcu-----CA-------------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60169 0.71 0.384083
Target:  5'- cGCCgugaaGGCGcuCGGCCaGUGGGcgGCAACCGg -3'
miRNA:   3'- -CGG-----UCGCu-GCCGG-CGCUCa-UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 38970 0.7 0.392773
Target:  5'- gGCaCGGCGcCGGCCGCGAucGCGAgCu -3'
miRNA:   3'- -CG-GUCGCuGCCGGCGCUcaUGUUgGc -5'
23869 5' -57.7 NC_005262.1 + 17565 0.7 0.40159
Target:  5'- aGCC-GCGGCGGCgCGCGA----AGCCGa -3'
miRNA:   3'- -CGGuCGCUGCCG-GCGCUcaugUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 43013 0.7 0.405151
Target:  5'- gGCCAGUucuuCGGCCGCuaccucgccagcuacGAGUACAucgacccgGCCGg -3'
miRNA:   3'- -CGGUCGcu--GCCGGCG---------------CUCAUGU--------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 56914 0.7 0.409632
Target:  5'- cGCCGGCGAgaucaaGGCCGCGcucgagaAGcGCAcGCCGa -3'
miRNA:   3'- -CGGUCGCUg-----CCGGCGC-------UCaUGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 57462 0.7 0.410531
Target:  5'- uGCCgcgacuacaAGCGGCGggcGCCGaCGAGagGCGGCCGg -3'
miRNA:   3'- -CGG---------UCGCUGC---CGGC-GCUCa-UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 4575 0.7 0.410531
Target:  5'- cGCCAGCGGCGGCgcugcucgggCGUGAGcGC--CCGc -3'
miRNA:   3'- -CGGUCGCUGCCG----------GCGCUCaUGuuGGC- -5'
23869 5' -57.7 NC_005262.1 + 24199 0.7 0.410531
Target:  5'- cGCCcgaGGCGGCaGCCGCGAcGcUGC-GCCGg -3'
miRNA:   3'- -CGG---UCGCUGcCGGCGCU-C-AUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 37245 0.7 0.410531
Target:  5'- gGCgCAGCGcguCGGCCGCuucgGAGUgGCcGCCGg -3'
miRNA:   3'- -CG-GUCGCu--GCCGGCG----CUCA-UGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 43207 0.7 0.410531
Target:  5'- aGCCcuGCGGCGcGCCGCGcGcUGCucGCCGg -3'
miRNA:   3'- -CGGu-CGCUGC-CGGCGCuC-AUGu-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 13949 0.7 0.418684
Target:  5'- uGCCGGagaaGAUGaGCCGCuGGUGCAccaggggGCCGg -3'
miRNA:   3'- -CGGUCg---CUGC-CGGCGcUCAUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 47715 0.7 0.419596
Target:  5'- cGCCgGGCGGCGGCuCGCcGccuguaucuGGUGCGccGCCGg -3'
miRNA:   3'- -CGG-UCGCUGCCG-GCG-C---------UCAUGU--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.