miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 38447 0.66 0.631423
Target:  5'- cGCCGGaCGACGGCaCGCucGUc--GCCGu -3'
miRNA:   3'- -CGGUC-GCUGCCG-GCGcuCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 32179 0.66 0.631423
Target:  5'- aGgCGGCGGCGGCgGCagaaGGUcggaACAACCc -3'
miRNA:   3'- -CgGUCGCUGCCGgCGc---UCA----UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 32018 0.66 0.631423
Target:  5'- gGCC-GUGGaaaaGGCCGCGAuGaUGCAgGCCGa -3'
miRNA:   3'- -CGGuCGCUg---CCGGCGCU-C-AUGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 21422 0.66 0.631423
Target:  5'- aGCUcGCGACGGCCGaCGuccGCgAGCUGg -3'
miRNA:   3'- -CGGuCGCUGCCGGC-GCucaUG-UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 41378 0.66 0.63036
Target:  5'- uGCCGGCGAgcaGGCgGCGcucgaucAGUGCgAACgCGg -3'
miRNA:   3'- -CGGUCGCUg--CCGgCGC-------UCAUG-UUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 59308 0.66 0.620794
Target:  5'- uGCCGGaCGGCGGCU-CGGGcaugacgACGGCUGa -3'
miRNA:   3'- -CGGUC-GCUGCCGGcGCUCa------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 63715 0.66 0.620794
Target:  5'- aGCguGCGgcGCGGCCgacuucuucGCGAGccGCGGCCu -3'
miRNA:   3'- -CGguCGC--UGCCGG---------CGCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 50417 0.66 0.619731
Target:  5'- cGCCGcggagcGCGAgGGCCGCGuGcACGucgucguGCCGc -3'
miRNA:   3'- -CGGU------CGCUgCCGGCGCuCaUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 25370 0.67 0.61442
Target:  5'- aGCCGGUG-CGGCaucaucgcgcaggauCGgGAG-ACGGCCGa -3'
miRNA:   3'- -CGGUCGCuGCCG---------------GCgCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 33658 0.67 0.61442
Target:  5'- cGCCGGCGcuucggcgaccagcaGCGGCacgauCGUGGGcuucgcgGCGGCCGg -3'
miRNA:   3'- -CGGUCGC---------------UGCCG-----GCGCUCa------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60079 0.67 0.610174
Target:  5'- cGCCGcgcGCGACGcGCUGaCGGGcACGAUCa -3'
miRNA:   3'- -CGGU---CGCUGC-CGGC-GCUCaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 10776 0.67 0.610174
Target:  5'- cGCCcGCGcCGGgCGCGcGGUACuGCUGc -3'
miRNA:   3'- -CGGuCGCuGCCgGCGC-UCAUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 30420 0.67 0.610174
Target:  5'- gGgCGGCGucgacgaucACGGCCgGCGGGUuguCGAUCGg -3'
miRNA:   3'- -CgGUCGC---------UGCCGG-CGCUCAu--GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 26989 0.67 0.610174
Target:  5'- cGCCAGUcACGGCCGU---UGCAGCa- -3'
miRNA:   3'- -CGGUCGcUGCCGGCGcucAUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 15308 0.67 0.609113
Target:  5'- cGCCgcgcaugGGCgGGCGGCCGuCGAGcaACAGCUu -3'
miRNA:   3'- -CGG-------UCG-CUGCCGGC-GCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 59116 0.67 0.608052
Target:  5'- uGCC-GCGGCccgauccGGCCGCGGcauggcuGUuCAACCGa -3'
miRNA:   3'- -CGGuCGCUG-------CCGGCGCU-------CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 18352 0.67 0.600631
Target:  5'- cGCCGGCGAUGGUUcCGAGcccgcccauaagccCGGCCGa -3'
miRNA:   3'- -CGGUCGCUGCCGGcGCUCau------------GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 19235 0.67 0.599572
Target:  5'- uGCCuGCGuauCGGCCGgCGAGaACAGgaaCGg -3'
miRNA:   3'- -CGGuCGCu--GCCGGC-GCUCaUGUUg--GC- -5'
23869 5' -57.7 NC_005262.1 + 27161 0.67 0.588996
Target:  5'- uGCCGGCacacCGGCCGCaugguGUGguGCCGu -3'
miRNA:   3'- -CGGUCGcu--GCCGGCGcu---CAUguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 51420 0.67 0.588996
Target:  5'- uGCuCGGCGGC-GCgCGCGAGgGCGauACCGu -3'
miRNA:   3'- -CG-GUCGCUGcCG-GCGCUCaUGU--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.