miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 17237 0.67 0.588996
Target:  5'- gGUCGuCGugGGCguCGCGGGagcgGCGGCCGg -3'
miRNA:   3'- -CGGUcGCugCCG--GCGCUCa---UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 51420 0.67 0.588996
Target:  5'- uGCuCGGCGGC-GCgCGCGAGgGCGauACCGu -3'
miRNA:   3'- -CG-GUCGCUGcCG-GCGCUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 59463 0.67 0.588996
Target:  5'- gGCCGaugGACGGcCCGCGAGgcUcGCCGu -3'
miRNA:   3'- -CGGUcg-CUGCC-GGCGCUCauGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 44851 0.67 0.578453
Target:  5'- gGCgAauGCGugGGcCCGCGAGgACcGCCa -3'
miRNA:   3'- -CGgU--CGCugCC-GGCGCUCaUGuUGGc -5'
23869 5' -57.7 NC_005262.1 + 16281 0.67 0.578453
Target:  5'- uGCCuugcuGCGcGCcGCuCGCGGcGUGCAACCGa -3'
miRNA:   3'- -CGGu----CGC-UGcCG-GCGCU-CAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 25688 0.67 0.578453
Target:  5'- -aCGGcCGAgGGCCGCGAGggcgaguucUACAACa- -3'
miRNA:   3'- cgGUC-GCUgCCGGCGCUC---------AUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 53488 0.67 0.578453
Target:  5'- gGCuCGGC-ACGGCCGa-AGUGCAgacGCCGc -3'
miRNA:   3'- -CG-GUCGcUGCCGGCgcUCAUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 52715 0.67 0.578453
Target:  5'- uGCCAGCGGgccgcccuuUGGCCGCucGGGcucaggcgacgcUGCGGCCu -3'
miRNA:   3'- -CGGUCGCU---------GCCGGCG--CUC------------AUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 8151 0.67 0.578453
Target:  5'- uGCCGGaCG-CGGCCaCGAGcgcGCGGCCc -3'
miRNA:   3'- -CGGUC-GCuGCCGGcGCUCa--UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 2141 0.67 0.578453
Target:  5'- uCCAGCG-C-GCCGCG-GUACAGCa- -3'
miRNA:   3'- cGGUCGCuGcCGGCGCuCAUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 53085 0.67 0.578453
Target:  5'- --gAGCGcCGGCCGCGuGcgcGCGGCCu -3'
miRNA:   3'- cggUCGCuGCCGGCGCuCa--UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 46774 0.67 0.577401
Target:  5'- aGgCGGCGAcgcgcgguaucaaCGGCgGCGAGccgAUGACCGa -3'
miRNA:   3'- -CgGUCGCU-------------GCCGgCGCUCa--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 42244 0.67 0.575298
Target:  5'- uCCAgGCGGCGGCaucugcuucaggacCGCGAGcUGCA-CCGc -3'
miRNA:   3'- cGGU-CGCUGCCG--------------GCGCUC-AUGUuGGC- -5'
23869 5' -57.7 NC_005262.1 + 38526 0.67 0.567952
Target:  5'- gGCCGGCaagagcuacACGGUCGCGGugACGAUCGg -3'
miRNA:   3'- -CGGUCGc--------UGCCGGCGCUcaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 19549 0.67 0.567952
Target:  5'- aGCCAGUGGCGcgagccaucGCuCGCGAuGUGCAugUu -3'
miRNA:   3'- -CGGUCGCUGC---------CG-GCGCU-CAUGUugGc -5'
23869 5' -57.7 NC_005262.1 + 14059 0.67 0.565858
Target:  5'- cGCCGGCGucggugcggcuuCGGCCGCcGGUuc-GCCGc -3'
miRNA:   3'- -CGGUCGCu-----------GCCGGCGcUCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 12817 0.67 0.564811
Target:  5'- aGCCGGCGcgugaagaaggagcGCGGCCucGCGGGaACcgucguGCCGa -3'
miRNA:   3'- -CGGUCGC--------------UGCCGG--CGCUCaUGu-----UGGC- -5'
23869 5' -57.7 NC_005262.1 + 63676 0.67 0.5575
Target:  5'- uGCCGGCGACGGC-GaCGAc-GCAAuCCGu -3'
miRNA:   3'- -CGGUCGCUGCCGgC-GCUcaUGUU-GGC- -5'
23869 5' -57.7 NC_005262.1 + 57216 0.67 0.5575
Target:  5'- uGCCGGuCGGCGGCauCGCGAcGcGCGccGCCa -3'
miRNA:   3'- -CGGUC-GCUGCCG--GCGCU-CaUGU--UGGc -5'
23869 5' -57.7 NC_005262.1 + 44672 0.67 0.5575
Target:  5'- cGCCGGCGACGcGCCcGCGcc--CGAuCCGa -3'
miRNA:   3'- -CGGUCGCUGC-CGG-CGCucauGUU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.