miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 5' -57 NC_005262.1 + 49618 0.66 0.677463
Target:  5'- cGGAUggagCGGCUUGCCGcacuccUCGgcGCGGCGg -3'
miRNA:   3'- -CCUGaca-GCCGGAUGGU------AGU--CGCCGU- -5'
23870 5' -57 NC_005262.1 + 17158 0.66 0.677463
Target:  5'- -cGCUGUCGGCC----AUCAGCGuGCc -3'
miRNA:   3'- ccUGACAGCCGGauggUAGUCGC-CGu -5'
23870 5' -57 NC_005262.1 + 5049 0.66 0.666741
Target:  5'- cGGcgcCUGaUCGGCgggcagGCCcgCGGCGGCGg -3'
miRNA:   3'- -CCu--GAC-AGCCGga----UGGuaGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 31763 0.66 0.666741
Target:  5'- cGGGUUuUCGGCCUGCauCAUC-GCGGCc -3'
miRNA:   3'- -CCUGAcAGCCGGAUG--GUAGuCGCCGu -5'
23870 5' -57 NC_005262.1 + 7627 0.66 0.655988
Target:  5'- cGGAC-GUUGGCCgaaugucgaCGcCGGCGGCGa -3'
miRNA:   3'- -CCUGaCAGCCGGaug------GUaGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 37006 0.66 0.645214
Target:  5'- ----cGUCGGCgaGacggaCAUCGGCGGCGg -3'
miRNA:   3'- ccugaCAGCCGgaUg----GUAGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 48366 0.66 0.645214
Target:  5'- -uGCUGgCGGCCgGCUAUCAGuCGGg- -3'
miRNA:   3'- ccUGACaGCCGGaUGGUAGUC-GCCgu -5'
23870 5' -57 NC_005262.1 + 33888 0.66 0.634429
Target:  5'- aGACgaucgugcGUCGGCCggcgGCCcgaucggUAGCGGCGg -3'
miRNA:   3'- cCUGa-------CAGCCGGa---UGGua-----GUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 46407 0.66 0.634429
Target:  5'- cGGcAUUGUCGGCC-GCCGagUCGacCGGCAg -3'
miRNA:   3'- -CC-UGACAGCCGGaUGGU--AGUc-GCCGU- -5'
23870 5' -57 NC_005262.1 + 31928 0.67 0.623642
Target:  5'- cGGAC-GUCGccaCCUGCUGUaCGGCGGUg -3'
miRNA:   3'- -CCUGaCAGCc--GGAUGGUA-GUCGCCGu -5'
23870 5' -57 NC_005262.1 + 15258 0.67 0.591358
Target:  5'- cGGGCc--CGGCCUGCacuUCGacGCGGCAu -3'
miRNA:   3'- -CCUGacaGCCGGAUGgu-AGU--CGCCGU- -5'
23870 5' -57 NC_005262.1 + 63011 0.68 0.559369
Target:  5'- uGGAUuuUGUCGGCCagUACggCAUCGGCaacuGGCGc -3'
miRNA:   3'- -CCUG--ACAGCCGG--AUG--GUAGUCG----CCGU- -5'
23870 5' -57 NC_005262.1 + 11895 0.68 0.559369
Target:  5'- cGGCgaagcgGUCGGU--GCCGuUCGGCGGCGu -3'
miRNA:   3'- cCUGa-----CAGCCGgaUGGU-AGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 47737 0.68 0.53831
Target:  5'- aGGAUcGUCGGCCgcaaGUCgcgguAGCGGCGg -3'
miRNA:   3'- -CCUGaCAGCCGGauggUAG-----UCGCCGU- -5'
23870 5' -57 NC_005262.1 + 45880 0.68 0.527882
Target:  5'- uGGC-GUCGGC--GCCgAUCGGCGGCu -3'
miRNA:   3'- cCUGaCAGCCGgaUGG-UAGUCGCCGu -5'
23870 5' -57 NC_005262.1 + 49157 0.68 0.527882
Target:  5'- uGGGCgugcaGGCCgcaucgGCCG-CAGCGGCGc -3'
miRNA:   3'- -CCUGacag-CCGGa-----UGGUaGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 33661 0.68 0.527882
Target:  5'- cGGCgcuUCGGCg-ACCAgCAGCGGCAc -3'
miRNA:   3'- cCUGac-AGCCGgaUGGUaGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 42190 0.68 0.50726
Target:  5'- uGGGCgacggCGcGCCgaagaugAUCGUCGGCGGCAc -3'
miRNA:   3'- -CCUGaca--GC-CGGa------UGGUAGUCGCCGU- -5'
23870 5' -57 NC_005262.1 + 21418 0.69 0.474019
Target:  5'- cGGuCUGUcCGGCCUGCCAguUCaccucguucgagauGGCGGaCGg -3'
miRNA:   3'- -CCuGACA-GCCGGAUGGU--AG--------------UCGCC-GU- -5'
23870 5' -57 NC_005262.1 + 49649 0.69 0.457325
Target:  5'- cGAUcGgCGGCCUGCaaggCGGCGGCAu -3'
miRNA:   3'- cCUGaCaGCCGGAUGgua-GUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.