Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23870 | 5' | -57 | NC_005262.1 | + | 59937 | 1.1 | 0.000698 |
Target: 5'- gGGACUGUCGGCCUACCAUCAGCGGCAc -3' miRNA: 3'- -CCUGACAGCCGGAUGGUAGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 18819 | 0.75 | 0.21215 |
Target: 5'- cGGACUgcugcacGUCGGCCcucGCC-UCGGCGGCc -3' miRNA: 3'- -CCUGA-------CAGCCGGa--UGGuAGUCGCCGu -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 6378 | 0.72 | 0.317731 |
Target: 5'- cGGAgcgUUGUCGGCC-GCCuucUCGGCGGUc -3' miRNA: 3'- -CCU---GACAGCCGGaUGGu--AGUCGCCGu -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 57225 | 0.72 | 0.32545 |
Target: 5'- uGGAgcCUGaUCGcGCCgcUCGUCGGCGGCAa -3' miRNA: 3'- -CCU--GAC-AGC-CGGauGGUAGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 60378 | 0.72 | 0.341303 |
Target: 5'- cGGCgaagGUCgccGGCCgcaagAUCGUCGGCGGCAu -3' miRNA: 3'- cCUGa---CAG---CCGGa----UGGUAGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 57205 | 0.71 | 0.349436 |
Target: 5'- cGACc--CGGaCCUGCCgGUCGGCGGCAu -3' miRNA: 3'- cCUGacaGCC-GGAUGG-UAGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 45176 | 0.71 | 0.379845 |
Target: 5'- cGGACgcgaucaacauggGUaaCGGCCUGCCcUCgcaGGCGGCAu -3' miRNA: 3'- -CCUGa------------CA--GCCGGAUGGuAG---UCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 32705 | 0.7 | 0.438097 |
Target: 5'- aGGAUUGUCgGGCCgcgGCUcgcccuucagGUCGGCGaGCGc -3' miRNA: 3'- -CCUGACAG-CCGGa--UGG----------UAGUCGC-CGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 1896 | 0.69 | 0.457325 |
Target: 5'- --cCUG-CGGCgUAUCGUCAGCaGGCAu -3' miRNA: 3'- ccuGACaGCCGgAUGGUAGUCG-CCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 49649 | 0.69 | 0.457325 |
Target: 5'- cGAUcGgCGGCCUGCaaggCGGCGGCAu -3' miRNA: 3'- cCUGaCaGCCGGAUGgua-GUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 21418 | 0.69 | 0.474019 |
Target: 5'- cGGuCUGUcCGGCCUGCCAguUCaccucguucgagauGGCGGaCGg -3' miRNA: 3'- -CCuGACA-GCCGGAUGGU--AG--------------UCGCC-GU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 42190 | 0.68 | 0.50726 |
Target: 5'- uGGGCgacggCGcGCCgaagaugAUCGUCGGCGGCAc -3' miRNA: 3'- -CCUGaca--GC-CGGa------UGGUAGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 45880 | 0.68 | 0.527882 |
Target: 5'- uGGC-GUCGGC--GCCgAUCGGCGGCu -3' miRNA: 3'- cCUGaCAGCCGgaUGG-UAGUCGCCGu -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 49157 | 0.68 | 0.527882 |
Target: 5'- uGGGCgugcaGGCCgcaucgGCCG-CAGCGGCGc -3' miRNA: 3'- -CCUGacag-CCGGa-----UGGUaGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 33661 | 0.68 | 0.527882 |
Target: 5'- cGGCgcuUCGGCg-ACCAgCAGCGGCAc -3' miRNA: 3'- cCUGac-AGCCGgaUGGUaGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 47737 | 0.68 | 0.53831 |
Target: 5'- aGGAUcGUCGGCCgcaaGUCgcgguAGCGGCGg -3' miRNA: 3'- -CCUGaCAGCCGGauggUAG-----UCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 63011 | 0.68 | 0.559369 |
Target: 5'- uGGAUuuUGUCGGCCagUACggCAUCGGCaacuGGCGc -3' miRNA: 3'- -CCUG--ACAGCCGG--AUG--GUAGUCG----CCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 11895 | 0.68 | 0.559369 |
Target: 5'- cGGCgaagcgGUCGGU--GCCGuUCGGCGGCGu -3' miRNA: 3'- cCUGa-----CAGCCGgaUGGU-AGUCGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 15258 | 0.67 | 0.591358 |
Target: 5'- cGGGCc--CGGCCUGCacuUCGacGCGGCAu -3' miRNA: 3'- -CCUGacaGCCGGAUGgu-AGU--CGCCGU- -5' |
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23870 | 5' | -57 | NC_005262.1 | + | 31928 | 0.67 | 0.623642 |
Target: 5'- cGGAC-GUCGccaCCUGCUGUaCGGCGGUg -3' miRNA: 3'- -CCUGaCAGCc--GGAUGGUA-GUCGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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