Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23873 | 3' | -56.7 | NC_005262.1 | + | 22130 | 0.74 | 0.233011 |
Target: 5'- uGCCgGCGGCGAuGaCGGcgCCGCCGGAAa -3' miRNA: 3'- gCGG-CGCUGUU-C-GCUuaGGUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 18241 | 0.75 | 0.227079 |
Target: 5'- aGCaGCG-CGAGCGAAUCCuugccGCCGGAAa -3' miRNA: 3'- gCGgCGCuGUUCGCUUAGG-----UGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 52454 | 0.78 | 0.136826 |
Target: 5'- uGCCGCGcGCGAGCGGcGUCUugCGGAGg -3' miRNA: 3'- gCGGCGC-UGUUCGCU-UAGGugGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 58946 | 1.06 | 0.001317 |
Target: 5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3' miRNA: 3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 35198 | 0.69 | 0.493993 |
Target: 5'- uGCCGCG-CAugaAGCGGAUCaCGCCGu-- -3' miRNA: 3'- gCGGCGCuGU---UCGCUUAG-GUGGCcuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 2005 | 0.68 | 0.514494 |
Target: 5'- gCGCCGCG-CAGGCGAAaacgCGCUGGu- -3' miRNA: 3'- -GCGGCGCuGUUCGCUUag--GUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 34037 | 0.68 | 0.524874 |
Target: 5'- aCGCCG-GGCGguugaGGCGggUUaGCCGGGAg -3' miRNA: 3'- -GCGGCgCUGU-----UCGCuuAGgUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 14055 | 0.66 | 0.66432 |
Target: 5'- gCGCCGcCGGCGucgguGCGGcuucggCCGCCGGu- -3' miRNA: 3'- -GCGGC-GCUGUu----CGCUua----GGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 16055 | 0.67 | 0.620997 |
Target: 5'- uCGCCGCGGCcGGCGGcg-CACCaGAu -3' miRNA: 3'- -GCGGCGCUGuUCGCUuagGUGGcCUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 28422 | 0.67 | 0.610167 |
Target: 5'- gCGCCGCGuGCGccAGCauauuUCCGCCGGu- -3' miRNA: 3'- -GCGGCGC-UGU--UCGcuu--AGGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 49237 | 0.67 | 0.610167 |
Target: 5'- gCGCCGCGGCGAGaCGccugccGAUCCAgCGc-- -3' miRNA: 3'- -GCGGCGCUGUUC-GC------UUAGGUgGCcuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 40240 | 0.67 | 0.576747 |
Target: 5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3' miRNA: 3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 18029 | 0.68 | 0.567114 |
Target: 5'- uCGCCGCGAUGccgaucGGCGucgcGUUCGCgGGAAc -3' miRNA: 3'- -GCGGCGCUGU------UCGCu---UAGGUGgCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 32059 | 0.68 | 0.545863 |
Target: 5'- gCGCuugCGCGACAuGCGA--CCGCCGGc- -3' miRNA: 3'- -GCG---GCGCUGUuCGCUuaGGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 40126 | 0.68 | 0.545863 |
Target: 5'- gCGCCGCu-CGGGCGGcAUCCA-CGGAu -3' miRNA: 3'- -GCGGCGcuGUUCGCU-UAGGUgGCCUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 4813 | 0.68 | 0.545863 |
Target: 5'- aCGgCGCGGgAGGCGugaggCCGCCGGc- -3' miRNA: 3'- -GCgGCGCUgUUCGCuua--GGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 6616 | 0.68 | 0.545863 |
Target: 5'- aGCgggaGCGACAcgagcGGCGAGgggUCGCCGGGGa -3' miRNA: 3'- gCGg---CGCUGU-----UCGCUUa--GGUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 36860 | 0.68 | 0.535332 |
Target: 5'- gGUCGCgGAUAggcGGCGAAUCCGgcUCGGGAu -3' miRNA: 3'- gCGGCG-CUGU---UCGCUUAGGU--GGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 17368 | 0.66 | 0.685846 |
Target: 5'- gCGgCGCGGCGGGCc---CCugCGGAc -3' miRNA: 3'- -GCgGCGCUGUUCGcuuaGGugGCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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