miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 51330 0.73 0.278241
Target:  5'- cCGCgCGCGGCAAGauCGAAUCCGCCa--- -3'
miRNA:   3'- -GCG-GCGCUGUUC--GCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 33946 0.72 0.330196
Target:  5'- gGCaCGCGGCAAGCGA--UC-CCGGAAc -3'
miRNA:   3'- gCG-GCGCUGUUCGCUuaGGuGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 10811 0.71 0.36635
Target:  5'- uGCCGCGACGAucacgaccagcgcauGCGcGUCCGCCGc-- -3'
miRNA:   3'- gCGGCGCUGUU---------------CGCuUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 45199 0.71 0.371487
Target:  5'- gGCCuGCccucGCAGGCGGcauGUCCGCCGGGc -3'
miRNA:   3'- gCGG-CGc---UGUUCGCU---UAGGUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 60135 0.7 0.406964
Target:  5'- gCGUCGCGGCGaaggcaugGGCGAAguacccggCCGCCGuGAAg -3'
miRNA:   3'- -GCGGCGCUGU--------UCGCUUa-------GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 15558 0.7 0.415234
Target:  5'- aGCCGCGAgAAGCGAGagCaggaggaGCUGGAGg -3'
miRNA:   3'- gCGGCGCUgUUCGCUUagG-------UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 50964 0.69 0.504198
Target:  5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3'
miRNA:   3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 25536 0.69 0.493993
Target:  5'- gCGUCGCGACGuccgugcgcGGCGGcacgAUCCACCGc-- -3'
miRNA:   3'- -GCGGCGCUGU---------UCGCU----UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 33876 0.69 0.463969
Target:  5'- aCGCCGCGcGCGAGaCGAucgugcGUCgGCCGGc- -3'
miRNA:   3'- -GCGGCGC-UGUUC-GCU------UAGgUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 42269 0.69 0.463969
Target:  5'- uGCgGCGACGAGCGGcacGggCACCGGc- -3'
miRNA:   3'- gCGgCGCUGUUCGCU---UagGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 23680 0.7 0.454174
Target:  5'- cCGCCcgaGCGGCGcguGUGggUCUACCGGc- -3'
miRNA:   3'- -GCGG---CGCUGUu--CGCuuAGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 14166 0.7 0.444492
Target:  5'- cCGCCGCGccgaggagugcgGCAAGCcgcUCCAuCCGGAAc -3'
miRNA:   3'- -GCGGCGC------------UGUUCGcuuAGGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 32059 0.68 0.545863
Target:  5'- gCGCuugCGCGACAuGCGA--CCGCCGGc- -3'
miRNA:   3'- -GCG---GCGCUGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 18029 0.68 0.567114
Target:  5'- uCGCCGCGAUGccgaucGGCGucgcGUUCGCgGGAAc -3'
miRNA:   3'- -GCGGCGCUGU------UCGCu---UAGGUGgCCUU- -5'
23873 3' -56.7 NC_005262.1 + 40240 0.67 0.576747
Target:  5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3'
miRNA:   3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5'
23873 3' -56.7 NC_005262.1 + 49237 0.67 0.610167
Target:  5'- gCGCCGCGGCGAGaCGccugccGAUCCAgCGc-- -3'
miRNA:   3'- -GCGGCGCUGUUC-GC------UUAGGUgGCcuu -5'
23873 3' -56.7 NC_005262.1 + 28422 0.67 0.610167
Target:  5'- gCGCCGCGuGCGccAGCauauuUCCGCCGGu- -3'
miRNA:   3'- -GCGGCGC-UGU--UCGcuu--AGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 16055 0.67 0.620997
Target:  5'- uCGCCGCGGCcGGCGGcg-CACCaGAu -3'
miRNA:   3'- -GCGGCGCUGuUCGCUuagGUGGcCUu -5'
23873 3' -56.7 NC_005262.1 + 14055 0.66 0.66432
Target:  5'- gCGCCGcCGGCGucgguGCGGcuucggCCGCCGGu- -3'
miRNA:   3'- -GCGGC-GCUGUu----CGCUua----GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 58946 1.06 0.001317
Target:  5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3'
miRNA:   3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.