Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23873 | 3' | -56.7 | NC_005262.1 | + | 8193 | 0.67 | 0.610167 |
Target: 5'- aCGCCGgaaGGCGccgcAGCGAugAUCCGCgCGGGc -3' miRNA: 3'- -GCGGCg--CUGU----UCGCU--UAGGUG-GCCUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 33876 | 0.69 | 0.463969 |
Target: 5'- aCGCCGCGcGCGAGaCGAucgugcGUCgGCCGGc- -3' miRNA: 3'- -GCGGCGC-UGUUC-GCU------UAGgUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 25536 | 0.69 | 0.493993 |
Target: 5'- gCGUCGCGACGuccgugcgcGGCGGcacgAUCCACCGc-- -3' miRNA: 3'- -GCGGCGCUGU---------UCGCU----UAGGUGGCcuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 50964 | 0.69 | 0.504198 |
Target: 5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3' miRNA: 3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 50803 | 0.68 | 0.514494 |
Target: 5'- uCGCCGagGGCAuggAGCGcuUCgCGCCGGAGa -3' miRNA: 3'- -GCGGCg-CUGU---UCGCuuAG-GUGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 68 | 0.68 | 0.545863 |
Target: 5'- gGCCGCGGCucGCGAagaaGUCgGCCGc-- -3' miRNA: 3'- gCGGCGCUGuuCGCU----UAGgUGGCcuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 35639 | 0.68 | 0.556459 |
Target: 5'- gGCaCGCGGCGGGCGAugggCUACuCGGu- -3' miRNA: 3'- gCG-GCGCUGUUCGCUua--GGUG-GCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 23568 | 0.67 | 0.57782 |
Target: 5'- cCGCCGCGcGCGGGCGcAGgagaUCGCCGuGAAa -3' miRNA: 3'- -GCGGCGC-UGUUCGC-UUa---GGUGGC-CUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 9995 | 0.67 | 0.599355 |
Target: 5'- aGCCuGCuGGCAAGCGAugUCGCCGaGAu -3' miRNA: 3'- gCGG-CG-CUGUUCGCUuaGGUGGC-CUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 42269 | 0.69 | 0.463969 |
Target: 5'- uGCgGCGACGAGCGGcacGggCACCGGc- -3' miRNA: 3'- gCGgCGCUGUUCGCU---UagGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 23680 | 0.7 | 0.454174 |
Target: 5'- cCGCCcgaGCGGCGcguGUGggUCUACCGGc- -3' miRNA: 3'- -GCGG---CGCUGUu--CGCuuAGGUGGCCuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 14166 | 0.7 | 0.444492 |
Target: 5'- cCGCCGCGccgaggagugcgGCAAGCcgcUCCAuCCGGAAc -3' miRNA: 3'- -GCGGCGC------------UGUUCGcuuAGGU-GGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 24889 | 0.75 | 0.210048 |
Target: 5'- gGCgCGUGACAGGCGAGcucggCCAgCCGGAGg -3' miRNA: 3'- gCG-GCGCUGUUCGCUUa----GGU-GGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 40538 | 0.74 | 0.233011 |
Target: 5'- uCGUCGCGGCGGGCGGcUCUuacgcGCCGGGc -3' miRNA: 3'- -GCGGCGCUGUUCGCUuAGG-----UGGCCUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 51330 | 0.73 | 0.278241 |
Target: 5'- cCGCgCGCGGCAAGauCGAAUCCGCCa--- -3' miRNA: 3'- -GCG-GCGCUGUUC--GCUUAGGUGGccuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 33946 | 0.72 | 0.330196 |
Target: 5'- gGCaCGCGGCAAGCGA--UC-CCGGAAc -3' miRNA: 3'- gCG-GCGCUGUUCGCUuaGGuGGCCUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 10811 | 0.71 | 0.36635 |
Target: 5'- uGCCGCGACGAucacgaccagcgcauGCGcGUCCGCCGc-- -3' miRNA: 3'- gCGGCGCUGUU---------------CGCuUAGGUGGCcuu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 45199 | 0.71 | 0.371487 |
Target: 5'- gGCCuGCccucGCAGGCGGcauGUCCGCCGGGc -3' miRNA: 3'- gCGG-CGc---UGUUCGCU---UAGGUGGCCUu -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 60135 | 0.7 | 0.406964 |
Target: 5'- gCGUCGCGGCGaaggcaugGGCGAAguacccggCCGCCGuGAAg -3' miRNA: 3'- -GCGGCGCUGU--------UCGCUUa-------GGUGGC-CUU- -5' |
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23873 | 3' | -56.7 | NC_005262.1 | + | 15558 | 0.7 | 0.415234 |
Target: 5'- aGCCGCGAgAAGCGAGagCaggaggaGCUGGAGg -3' miRNA: 3'- gCGGCGCUgUUCGCUUagG-------UGGCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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