miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 68 0.68 0.545863
Target:  5'- gGCCGCGGCucGCGAagaaGUCgGCCGc-- -3'
miRNA:   3'- gCGGCGCUGuuCGCU----UAGgUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 1034 0.66 0.653508
Target:  5'- gGCCGUGGCGuucgacaauaGGCGcGAUCgGcCCGGAGc -3'
miRNA:   3'- gCGGCGCUGU----------UCGC-UUAGgU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 2005 0.68 0.514494
Target:  5'- gCGCCGCG-CAGGCGAAaacgCGCUGGu- -3'
miRNA:   3'- -GCGGCGCuGUUCGCUUag--GUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 4813 0.68 0.545863
Target:  5'- aCGgCGCGGgAGGCGugaggCCGCCGGc- -3'
miRNA:   3'- -GCgGCGCUgUUCGCuua--GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 5505 0.66 0.66432
Target:  5'- gGCCGCGACGAcCGG----ACCGGGAu -3'
miRNA:   3'- gCGGCGCUGUUcGCUuaggUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 6353 0.72 0.322355
Target:  5'- cCGCCGCGGCAuccGCGGAcggUGCCGGAGc -3'
miRNA:   3'- -GCGGCGCUGUu--CGCUUag-GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 6616 0.68 0.545863
Target:  5'- aGCgggaGCGACAcgagcGGCGAGgggUCGCCGGGGa -3'
miRNA:   3'- gCGg---CGCUGU-----UCGCUUa--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 8193 0.67 0.610167
Target:  5'- aCGCCGgaaGGCGccgcAGCGAugAUCCGCgCGGGc -3'
miRNA:   3'- -GCGGCg--CUGU----UCGCU--UAGGUG-GCCUu -5'
23873 3' -56.7 NC_005262.1 + 9995 0.67 0.599355
Target:  5'- aGCCuGCuGGCAAGCGAugUCGCCGaGAu -3'
miRNA:   3'- gCGG-CG-CUGUUCGCUuaGGUGGC-CUu -5'
23873 3' -56.7 NC_005262.1 + 10811 0.71 0.36635
Target:  5'- uGCCGCGACGAucacgaccagcgcauGCGcGUCCGCCGc-- -3'
miRNA:   3'- gCGGCGCUGUU---------------CGCuUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 12118 0.66 0.653508
Target:  5'- cCGCCGUGcgcGCGAGCaGAUCgccgCGCUGGAGa -3'
miRNA:   3'- -GCGGCGC---UGUUCGcUUAG----GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 14055 0.66 0.66432
Target:  5'- gCGCCGcCGGCGucgguGCGGcuucggCCGCCGGu- -3'
miRNA:   3'- -GCGGC-GCUGUu----CGCUua----GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 14166 0.7 0.444492
Target:  5'- cCGCCGCGccgaggagugcgGCAAGCcgcUCCAuCCGGAAc -3'
miRNA:   3'- -GCGGCGC------------UGUUCGcuuAGGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 15558 0.7 0.415234
Target:  5'- aGCCGCGAgAAGCGAGagCaggaggaGCUGGAGg -3'
miRNA:   3'- gCGGCGCUgUUCGCUUagG-------UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 16055 0.67 0.620997
Target:  5'- uCGCCGCGGCcGGCGGcg-CACCaGAu -3'
miRNA:   3'- -GCGGCGCUGuUCGCUuagGUGGcCUu -5'
23873 3' -56.7 NC_005262.1 + 17368 0.66 0.685846
Target:  5'- gCGgCGCGGCGGGCc---CCugCGGAc -3'
miRNA:   3'- -GCgGCGCUGUUCGcuuaGGugGCCUu -5'
23873 3' -56.7 NC_005262.1 + 17565 0.67 0.620997
Target:  5'- aGCCGCGGCGGcgcGCGAAgCCGa-GGAGa -3'
miRNA:   3'- gCGGCGCUGUU---CGCUUaGGUggCCUU- -5'
23873 3' -56.7 NC_005262.1 + 18029 0.68 0.567114
Target:  5'- uCGCCGCGAUGccgaucGGCGucgcGUUCGCgGGAAc -3'
miRNA:   3'- -GCGGCGCUGU------UCGCu---UAGGUGgCCUU- -5'
23873 3' -56.7 NC_005262.1 + 18241 0.75 0.227079
Target:  5'- aGCaGCG-CGAGCGAAUCCuugccGCCGGAAa -3'
miRNA:   3'- gCGgCGCuGUUCGCUUAGG-----UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 19636 0.7 0.433977
Target:  5'- cCGCCGCGcuccugcccgaucGCGcGCGcGUCCGgCCGGAAc -3'
miRNA:   3'- -GCGGCGC-------------UGUuCGCuUAGGU-GGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.