miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 61160 0.66 0.685846
Target:  5'- uCGCgGCGGCGGGCGAG-CUGaCGGGc -3'
miRNA:   3'- -GCGgCGCUGUUCGCUUaGGUgGCCUu -5'
23873 3' -56.7 NC_005262.1 + 60135 0.7 0.406964
Target:  5'- gCGUCGCGGCGaaggcaugGGCGAAguacccggCCGCCGuGAAg -3'
miRNA:   3'- -GCGGCGCUGU--------UCGCUUa-------GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 60132 0.7 0.406964
Target:  5'- gGCCaGCGACGGccGCGAGUacaACCGGGAg -3'
miRNA:   3'- gCGG-CGCUGUU--CGCUUAgg-UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 58946 1.06 0.001317
Target:  5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3'
miRNA:   3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 58766 0.7 0.454174
Target:  5'- gCGCCGgcCGGCGAGCaacugCCGCUGGAGg -3'
miRNA:   3'- -GCGGC--GCUGUUCGcuua-GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 56955 0.67 0.631837
Target:  5'- -uCCGCG-CGGGCGAGUUCGCgGGc- -3'
miRNA:   3'- gcGGCGCuGUUCGCUUAGGUGgCCuu -5'
23873 3' -56.7 NC_005262.1 + 54564 0.66 0.685846
Target:  5'- uCGCCGCGuucGCGAGCGAGg-CGCUGa-- -3'
miRNA:   3'- -GCGGCGC---UGUUCGCUUagGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 52454 0.78 0.136826
Target:  5'- uGCCGCGcGCGAGCGGcGUCUugCGGAGg -3'
miRNA:   3'- gCGGCGC-UGUUCGCU-UAGGugGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 51330 0.73 0.278241
Target:  5'- cCGCgCGCGGCAAGauCGAAUCCGCCa--- -3'
miRNA:   3'- -GCG-GCGCUGUUC--GCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 51209 0.76 0.199314
Target:  5'- aGCCGCG-CGGGCGAugcugAUCgCACCGGGc -3'
miRNA:   3'- gCGGCGCuGUUCGCU-----UAG-GUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 50964 0.69 0.504198
Target:  5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3'
miRNA:   3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 50803 0.68 0.514494
Target:  5'- uCGCCGagGGCAuggAGCGcuUCgCGCCGGAGa -3'
miRNA:   3'- -GCGGCg-CUGU---UCGCuuAG-GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 49237 0.67 0.610167
Target:  5'- gCGCCGCGGCGAGaCGccugccGAUCCAgCGc-- -3'
miRNA:   3'- -GCGGCGCUGUUC-GC------UUAGGUgGCcuu -5'
23873 3' -56.7 NC_005262.1 + 48675 0.66 0.653508
Target:  5'- aGCUGcCGGCcAGCGcguUCCAgCCGGAc -3'
miRNA:   3'- gCGGC-GCUGuUCGCuu-AGGU-GGCCUu -5'
23873 3' -56.7 NC_005262.1 + 46702 0.67 0.619914
Target:  5'- gCGCCGCGcGCGcaguggacaagccGGCGcAAUCCggcacgACCGGAu -3'
miRNA:   3'- -GCGGCGC-UGU-------------UCGC-UUAGG------UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 45199 0.71 0.371487
Target:  5'- gGCCuGCccucGCAGGCGGcauGUCCGCCGGGc -3'
miRNA:   3'- gCGG-CGc---UGUUCGCU---UAGGUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 42269 0.69 0.463969
Target:  5'- uGCgGCGACGAGCGGcacGggCACCGGc- -3'
miRNA:   3'- gCGgCGCUGUUCGCU---UagGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 42082 0.67 0.631837
Target:  5'- cCGCCGgccaGAuCGAGaCG-AUCUACCGGAAc -3'
miRNA:   3'- -GCGGCg---CU-GUUC-GCuUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 40538 0.74 0.233011
Target:  5'- uCGUCGCGGCGGGCGGcUCUuacgcGCCGGGc -3'
miRNA:   3'- -GCGGCGCUGUUCGCUuAGG-----UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 40240 0.67 0.576747
Target:  5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3'
miRNA:   3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.