miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 58946 1.06 0.001317
Target:  5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3'
miRNA:   3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 52454 0.78 0.136826
Target:  5'- uGCCGCGcGCGAGCGGcGUCUugCGGAGg -3'
miRNA:   3'- gCGGCGC-UGUUCGCU-UAGGugGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 51209 0.76 0.199314
Target:  5'- aGCCGCG-CGGGCGAugcugAUCgCACCGGGc -3'
miRNA:   3'- gCGGCGCuGUUCGCU-----UAG-GUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 24889 0.75 0.210048
Target:  5'- gGCgCGUGACAGGCGAGcucggCCAgCCGGAGg -3'
miRNA:   3'- gCG-GCGCUGUUCGCUUa----GGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 18241 0.75 0.227079
Target:  5'- aGCaGCG-CGAGCGAAUCCuugccGCCGGAAa -3'
miRNA:   3'- gCGgCGCuGUUCGCUUAGG-----UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 22130 0.74 0.233011
Target:  5'- uGCCgGCGGCGAuGaCGGcgCCGCCGGAAa -3'
miRNA:   3'- gCGG-CGCUGUU-C-GCUuaGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 40538 0.74 0.233011
Target:  5'- uCGUCGCGGCGGGCGGcUCUuacgcGCCGGGc -3'
miRNA:   3'- -GCGGCGCUGUUCGCUuAGG-----UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 51330 0.73 0.278241
Target:  5'- cCGCgCGCGGCAAGauCGAAUCCGCCa--- -3'
miRNA:   3'- -GCG-GCGCUGUUC--GCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 6353 0.72 0.322355
Target:  5'- cCGCCGCGGCAuccGCGGAcggUGCCGGAGc -3'
miRNA:   3'- -GCGGCGCUGUu--CGCUUag-GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 33946 0.72 0.330196
Target:  5'- gGCaCGCGGCAAGCGA--UC-CCGGAAc -3'
miRNA:   3'- gCG-GCGCUGUUCGCUuaGGuGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 20738 0.72 0.346297
Target:  5'- uGCCGCGGCGcGCGGugCCgGCCGGGu -3'
miRNA:   3'- gCGGCGCUGUuCGCUuaGG-UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 10811 0.71 0.36635
Target:  5'- uGCCGCGACGAucacgaccagcgcauGCGcGUCCGCCGc-- -3'
miRNA:   3'- gCGGCGCUGUU---------------CGCuUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 37002 0.71 0.371487
Target:  5'- gGCCGgGcgccuCAAGCGAAUCCGCCa--- -3'
miRNA:   3'- gCGGCgCu----GUUCGCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 45199 0.71 0.371487
Target:  5'- gGCCuGCccucGCAGGCGGcauGUCCGCCGGGc -3'
miRNA:   3'- gCGG-CGc---UGUUCGCU---UAGGUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 30889 0.71 0.380156
Target:  5'- gCGUCGCG-CGuGCGAcgCCGCCGGc- -3'
miRNA:   3'- -GCGGCGCuGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 60132 0.7 0.406964
Target:  5'- gGCCaGCGACGGccGCGAGUacaACCGGGAg -3'
miRNA:   3'- gCGG-CGCUGUU--CGCUUAgg-UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 60135 0.7 0.406964
Target:  5'- gCGUCGCGGCGaaggcaugGGCGAAguacccggCCGCCGuGAAg -3'
miRNA:   3'- -GCGGCGCUGU--------UCGCUUa-------GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 15558 0.7 0.415234
Target:  5'- aGCCGCGAgAAGCGAGagCaggaggaGCUGGAGg -3'
miRNA:   3'- gCGGCGCUgUUCGCUUagG-------UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 19636 0.7 0.433977
Target:  5'- cCGCCGCGcuccugcccgaucGCGcGCGcGUCCGgCCGGAAc -3'
miRNA:   3'- -GCGGCGC-------------UGUuCGCuUAGGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 14166 0.7 0.444492
Target:  5'- cCGCCGCGccgaggagugcgGCAAGCcgcUCCAuCCGGAAc -3'
miRNA:   3'- -GCGGCGC------------UGUUCGcuuAGGU-GGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.