miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 20738 0.72 0.346297
Target:  5'- uGCCGCGGCGcGCGGugCCgGCCGGGu -3'
miRNA:   3'- gCGGCGCUGUuCGCUuaGG-UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 22130 0.74 0.233011
Target:  5'- uGCCgGCGGCGAuGaCGGcgCCGCCGGAAa -3'
miRNA:   3'- gCGG-CGCUGUU-C-GCUuaGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 23568 0.67 0.57782
Target:  5'- cCGCCGCGcGCGGGCGcAGgagaUCGCCGuGAAa -3'
miRNA:   3'- -GCGGCGC-UGUUCGC-UUa---GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 23680 0.7 0.454174
Target:  5'- cCGCCcgaGCGGCGcguGUGggUCUACCGGc- -3'
miRNA:   3'- -GCGG---CGCUGUu--CGCuuAGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 24889 0.75 0.210048
Target:  5'- gGCgCGUGACAGGCGAGcucggCCAgCCGGAGg -3'
miRNA:   3'- gCG-GCGCUGUUCGCUUa----GGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 25536 0.69 0.493993
Target:  5'- gCGUCGCGACGuccgugcgcGGCGGcacgAUCCACCGc-- -3'
miRNA:   3'- -GCGGCGCUGU---------UCGCU----UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 25940 0.69 0.463969
Target:  5'- gCGCCGauGCAGG-GAAUCCACCGa-- -3'
miRNA:   3'- -GCGGCgcUGUUCgCUUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 28422 0.67 0.610167
Target:  5'- gCGCCGCGuGCGccAGCauauuUCCGCCGGu- -3'
miRNA:   3'- -GCGGCGC-UGU--UCGcuu--AGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 30889 0.71 0.380156
Target:  5'- gCGUCGCG-CGuGCGAcgCCGCCGGc- -3'
miRNA:   3'- -GCGGCGCuGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 31299 0.66 0.642677
Target:  5'- uCGCgGCGACAAuGgGucuGUCCGCCGa-- -3'
miRNA:   3'- -GCGgCGCUGUU-CgCu--UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 32059 0.68 0.545863
Target:  5'- gCGCuugCGCGACAuGCGA--CCGCCGGc- -3'
miRNA:   3'- -GCG---GCGCUGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 33876 0.69 0.463969
Target:  5'- aCGCCGCGcGCGAGaCGAucgugcGUCgGCCGGc- -3'
miRNA:   3'- -GCGGCGC-UGUUC-GCU------UAGgUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 33946 0.72 0.330196
Target:  5'- gGCaCGCGGCAAGCGA--UC-CCGGAAc -3'
miRNA:   3'- gCG-GCGCUGUUCGCUuaGGuGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 34037 0.68 0.524874
Target:  5'- aCGCCG-GGCGguugaGGCGggUUaGCCGGGAg -3'
miRNA:   3'- -GCGGCgCUGU-----UCGCuuAGgUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 35198 0.69 0.493993
Target:  5'- uGCCGCG-CAugaAGCGGAUCaCGCCGu-- -3'
miRNA:   3'- gCGGCGCuGU---UCGCUUAG-GUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 35639 0.68 0.556459
Target:  5'- gGCaCGCGGCGGGCGAugggCUACuCGGu- -3'
miRNA:   3'- gCG-GCGCUGUUCGCUua--GGUG-GCCuu -5'
23873 3' -56.7 NC_005262.1 + 36860 0.68 0.535332
Target:  5'- gGUCGCgGAUAggcGGCGAAUCCGgcUCGGGAu -3'
miRNA:   3'- gCGGCG-CUGU---UCGCUUAGGU--GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 37002 0.71 0.371487
Target:  5'- gGCCGgGcgccuCAAGCGAAUCCGCCa--- -3'
miRNA:   3'- gCGGCgCu----GUUCGCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 40126 0.68 0.545863
Target:  5'- gCGCCGCu-CGGGCGGcAUCCA-CGGAu -3'
miRNA:   3'- -GCGGCGcuGUUCGCU-UAGGUgGCCUu -5'
23873 3' -56.7 NC_005262.1 + 40240 0.67 0.576747
Target:  5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3'
miRNA:   3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.