miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 17368 0.66 0.685846
Target:  5'- gCGgCGCGGCGGGCc---CCugCGGAc -3'
miRNA:   3'- -GCgGCGCUGUUCGcuuaGGugGCCUu -5'
23873 3' -56.7 NC_005262.1 + 19636 0.7 0.433977
Target:  5'- cCGCCGCGcuccugcccgaucGCGcGCGcGUCCGgCCGGAAc -3'
miRNA:   3'- -GCGGCGC-------------UGUuCGCuUAGGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 30889 0.71 0.380156
Target:  5'- gCGUCGCG-CGuGCGAcgCCGCCGGc- -3'
miRNA:   3'- -GCGGCGCuGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 58946 1.06 0.001317
Target:  5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3'
miRNA:   3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 49237 0.67 0.610167
Target:  5'- gCGCCGCGGCGAGaCGccugccGAUCCAgCGc-- -3'
miRNA:   3'- -GCGGCGCUGUUC-GC------UUAGGUgGCcuu -5'
23873 3' -56.7 NC_005262.1 + 40240 0.67 0.576747
Target:  5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3'
miRNA:   3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5'
23873 3' -56.7 NC_005262.1 + 32059 0.68 0.545863
Target:  5'- gCGCuugCGCGACAuGCGA--CCGCCGGc- -3'
miRNA:   3'- -GCG---GCGCUGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 40126 0.68 0.545863
Target:  5'- gCGCCGCu-CGGGCGGcAUCCA-CGGAu -3'
miRNA:   3'- -GCGGCGcuGUUCGCU-UAGGUgGCCUu -5'
23873 3' -56.7 NC_005262.1 + 36860 0.68 0.535332
Target:  5'- gGUCGCgGAUAggcGGCGAAUCCGgcUCGGGAu -3'
miRNA:   3'- gCGGCG-CUGU---UCGCUUAGGU--GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 58766 0.7 0.454174
Target:  5'- gCGCCGgcCGGCGAGCaacugCCGCUGGAGg -3'
miRNA:   3'- -GCGGC--GCUGUUCGcuua-GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 2005 0.68 0.514494
Target:  5'- gCGCCGCG-CAGGCGAAaacgCGCUGGu- -3'
miRNA:   3'- -GCGGCGCuGUUCGCUUag--GUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 6616 0.68 0.545863
Target:  5'- aGCgggaGCGACAcgagcGGCGAGgggUCGCCGGGGa -3'
miRNA:   3'- gCGg---CGCUGU-----UCGCUUa--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 14055 0.66 0.66432
Target:  5'- gCGCCGcCGGCGucgguGCGGcuucggCCGCCGGu- -3'
miRNA:   3'- -GCGGC-GCUGUu----CGCUua----GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 35198 0.69 0.493993
Target:  5'- uGCCGCG-CAugaAGCGGAUCaCGCCGu-- -3'
miRNA:   3'- gCGGCGCuGU---UCGCUUAG-GUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 16055 0.67 0.620997
Target:  5'- uCGCCGCGGCcGGCGGcg-CACCaGAu -3'
miRNA:   3'- -GCGGCGCUGuUCGCUuagGUGGcCUu -5'
23873 3' -56.7 NC_005262.1 + 4813 0.68 0.545863
Target:  5'- aCGgCGCGGgAGGCGugaggCCGCCGGc- -3'
miRNA:   3'- -GCgGCGCUgUUCGCuua--GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 25940 0.69 0.463969
Target:  5'- gCGCCGauGCAGG-GAAUCCACCGa-- -3'
miRNA:   3'- -GCGGCgcUGUUCgCUUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 60132 0.7 0.406964
Target:  5'- gGCCaGCGACGGccGCGAGUacaACCGGGAg -3'
miRNA:   3'- gCGG-CGCUGUU--CGCUUAgg-UGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 28422 0.67 0.610167
Target:  5'- gCGCCGCGuGCGccAGCauauuUCCGCCGGu- -3'
miRNA:   3'- -GCGGCGC-UGU--UCGcuu--AGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 18029 0.68 0.567114
Target:  5'- uCGCCGCGAUGccgaucGGCGucgcGUUCGCgGGAAc -3'
miRNA:   3'- -GCGGCGCUGU------UCGCu---UAGGUGgCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.