miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 34169 0.68 0.260394
Target:  5'- uCGCCGGCacgaaGGuCGAGaCGcugcauuccgaGCUGCCGCc- -3'
miRNA:   3'- -GCGGCCGg----CC-GCUC-GU-----------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 29748 0.68 0.260394
Target:  5'- -uCUGGUCGuCGAGCAACUGCCGa-- -3'
miRNA:   3'- gcGGCCGGCcGCUCGUUGACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 22124 0.68 0.254149
Target:  5'- uGCCGguGCCGGCG-GCGAUgacggcGCCGCc- -3'
miRNA:   3'- gCGGC--CGGCCGCuCGUUGa-----CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58610 0.68 0.254149
Target:  5'- gCGCCGGCCGcgcccGCGcccGCGACgccgGCCGUc- -3'
miRNA:   3'- -GCGGCCGGC-----CGCu--CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5321 0.68 0.254149
Target:  5'- aGCUGGCCGGCagGAGCuuCgcaCCGCg- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGuuGac-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 61162 0.68 0.254149
Target:  5'- gCGgCGGCgGGCGAGCuGACggGCgCGCg- -3'
miRNA:   3'- -GCgGCCGgCCGCUCG-UUGa-CG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 29632 0.68 0.248028
Target:  5'- aCGCCGcaaCCGGCaucggcagcGAGCGGCaUGCCGCc- -3'
miRNA:   3'- -GCGGCc--GGCCG---------CUCGUUG-ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 41682 0.69 0.236152
Target:  5'- cCGCCGGCacCGGCaucGGCAucuaUGCCGCa- -3'
miRNA:   3'- -GCGGCCG--GCCGc--UCGUug--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 38044 0.69 0.236152
Target:  5'- uCGCgGGCC-GUGAGCGGCUuGCCGgcCUGc -3'
miRNA:   3'- -GCGgCCGGcCGCUCGUUGA-CGGC--GAC- -5'
23874 3' -63.1 NC_005262.1 + 56909 0.69 0.236152
Target:  5'- aCGCUcGCCGGCGAGaucaagGCCGCg- -3'
miRNA:   3'- -GCGGcCGGCCGCUCguuga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52582 0.69 0.236152
Target:  5'- aGCCGaGUCGGCGA-CGACUaCCGCg- -3'
miRNA:   3'- gCGGC-CGGCCGCUcGUUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 238 0.69 0.234413
Target:  5'- cCGCCGGCggCGGCGGGaCAuuucgcgcggacguACacgcgcugagUGCCGCUGc -3'
miRNA:   3'- -GCGGCCG--GCCGCUC-GU--------------UG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 51216 0.69 0.230395
Target:  5'- aCGCCucGCCGGCGgcagcAGCAGCUcgacgagcgccGCCGCg- -3'
miRNA:   3'- -GCGGc-CGGCCGC-----UCGUUGA-----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49517 0.69 0.230395
Target:  5'- uCGCCgagGGCCuGCucGAGgAGCUGCCGCa- -3'
miRNA:   3'- -GCGG---CCGGcCG--CUCgUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 35627 0.69 0.230395
Target:  5'- uCGuCCGGCaacggcacgCGGCGGGCGAUgggcuacucggUGCCGCa- -3'
miRNA:   3'- -GC-GGCCG---------GCCGCUCGUUG-----------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 62571 0.69 0.230395
Target:  5'- gGUCGGaggCGGCGAGCu-UUGCCGCc- -3'
miRNA:   3'- gCGGCCg--GCCGCUCGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 6888 0.69 0.224757
Target:  5'- gGCCuugaucucGCCGGCGAGCGugUuGUCGCg- -3'
miRNA:   3'- gCGGc-------CGGCCGCUCGUugA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16963 0.69 0.219236
Target:  5'- aCGCCGGCgcgcuuuucuCGGCGAGCGcGCggGCCuGCa- -3'
miRNA:   3'- -GCGGCCG----------GCCGCUCGU-UGa-CGG-CGac -5'
23874 3' -63.1 NC_005262.1 + 13928 0.69 0.219236
Target:  5'- -uCCGGCCGGCuGAGCuGCUuccgguaccGCCGCc- -3'
miRNA:   3'- gcGGCCGGCCG-CUCGuUGA---------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 22247 0.69 0.219236
Target:  5'- aCGCCGGCCGGCcugcGCAucAC-GCCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcu--CGU--UGaCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.