miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 1470 0.67 0.307636
Target:  5'- aCGCCGcccgcucgucuGCCGGC-----GCUGCCGCUGc -3'
miRNA:   3'- -GCGGC-----------CGGCCGcucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 60833 0.67 0.307636
Target:  5'- gCGCCGGCCuacgcgaucGGCGuGGCGAUgGCCGa-- -3'
miRNA:   3'- -GCGGCCGG---------CCGC-UCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 12614 0.67 0.307636
Target:  5'- aGCgGGCCGccGCGucGuCGGCUGCCuGCUGc -3'
miRNA:   3'- gCGgCCGGC--CGCu-C-GUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 13963 0.67 0.303342
Target:  5'- aGCCgcuggugcaccagggGGCCGGUGGGCGAa---CGCUGg -3'
miRNA:   3'- gCGG---------------CCGGCCGCUCGUUgacgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 38976 0.67 0.300504
Target:  5'- gCGCCGGCCGcgaucGCGAGCucgcGCUuGCC-CUu -3'
miRNA:   3'- -GCGGCCGGC-----CGCUCGu---UGA-CGGcGAc -5'
23874 3' -63.1 NC_005262.1 + 52245 0.67 0.300504
Target:  5'- gCGCgCGugaugcacuucaGCCGGCGAGCGGCcgaGUCGCa- -3'
miRNA:   3'- -GCG-GC------------CGGCCGCUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52704 0.67 0.300504
Target:  5'- cCGCCGGCCGaCGccggacgaGGCcGC-GCUGCUGa -3'
miRNA:   3'- -GCGGCCGGCcGC--------UCGuUGaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 47714 0.67 0.300504
Target:  5'- gCGCCGGgCGGCG-GCuc--GCCGcCUGu -3'
miRNA:   3'- -GCGGCCgGCCGCuCGuugaCGGC-GAC- -5'
23874 3' -63.1 NC_005262.1 + 60500 0.67 0.293501
Target:  5'- aCGCCgGGCCGcGCGGcGCAg--GCCGCc- -3'
miRNA:   3'- -GCGG-CCGGC-CGCU-CGUugaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16996 0.67 0.286626
Target:  5'- cCGCCGGCCGaGCGcGCG-CUcGUCguGCUGa -3'
miRNA:   3'- -GCGGCCGGC-CGCuCGUuGA-CGG--CGAC- -5'
23874 3' -63.1 NC_005262.1 + 38521 0.67 0.286626
Target:  5'- gGCaCGGCCGGCaaGAGCuacACgGUCGCg- -3'
miRNA:   3'- gCG-GCCGGCCG--CUCGu--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 33657 0.67 0.286626
Target:  5'- cCGCCGGCgcuuCGGCGAcCAGCaGCgGCa- -3'
miRNA:   3'- -GCGGCCG----GCCGCUcGUUGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 40561 0.68 0.279878
Target:  5'- gCGCCGGgcaacaCCGGCGGugccGCGACcGUCGCg- -3'
miRNA:   3'- -GCGGCC------GGCCGCU----CGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 24884 0.68 0.273258
Target:  5'- cCGCCGGCgcgugacaGGCGAGCucgGCcaGCCGgaGg -3'
miRNA:   3'- -GCGGCCGg-------CCGCUCGu--UGa-CGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 52820 0.68 0.266763
Target:  5'- gGCaGGCgcuCGGCGAGCGGCUGaagGCUGc -3'
miRNA:   3'- gCGgCCG---GCCGCUCGUUGACgg-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 23002 0.68 0.266121
Target:  5'- aGCUGGCCGuGCGGcaugaauGCGGCUuCCGCg- -3'
miRNA:   3'- gCGGCCGGC-CGCU-------CGUUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 34169 0.68 0.260394
Target:  5'- uCGCCGGCacgaaGGuCGAGaCGcugcauuccgaGCUGCCGCc- -3'
miRNA:   3'- -GCGGCCGg----CC-GCUC-GU-----------UGACGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.