Results 21 - 40 of 138 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 59198 | 0.66 | 0.345223 |
Target: 5'- cCGCCcguuccuGCgGGCgcucacgcccGAGCAGCgccGCCGCUGg -3' miRNA: 3'- -GCGGc------CGgCCG----------CUCGUUGa--CGGCGAC- -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 52304 | 0.66 | 0.345223 |
Target: 5'- aGCCGaGCuCGGCGAcGCGGCccaugUGCuCGCg- -3' miRNA: 3'- gCGGC-CG-GCCGCU-CGUUG-----ACG-GCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 48039 | 0.66 | 0.345223 |
Target: 5'- uCGCCGGCCGGC-AGguGCU-UCGUc- -3' miRNA: 3'- -GCGGCCGGCCGcUCguUGAcGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 38260 | 0.66 | 0.345223 |
Target: 5'- cCGCCGcGCaCGGaCGucGCGACgcggaUGCUGCUGu -3' miRNA: 3'- -GCGGC-CG-GCC-GCu-CGUUG-----ACGGCGAC- -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 63018 | 0.66 | 0.345223 |
Target: 5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3' miRNA: 3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 8235 | 0.66 | 0.34444 |
Target: 5'- aGCCGGCCGGguCGAugcccuugauguuGCu-CUGCUGCg- -3' miRNA: 3'- gCGGCCGGCC--GCU-------------CGuuGACGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 16405 | 0.66 | 0.337449 |
Target: 5'- gGCCGGCCGcCGGGauuCUgcGCCGCg- -3' miRNA: 3'- gCGGCCGGCcGCUCguuGA--CGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 39502 | 0.66 | 0.337449 |
Target: 5'- aGCaucaGGgCGGCGAGCGucgcgccgAUUGCUGCg- -3' miRNA: 3'- gCGg---CCgGCCGCUCGU--------UGACGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 50446 | 0.67 | 0.329803 |
Target: 5'- uCGUCGuGCCGcGCGAGgagGACgGCCGCa- -3' miRNA: 3'- -GCGGC-CGGC-CGCUCg--UUGaCGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 30880 | 0.67 | 0.329803 |
Target: 5'- uCGCCgagcGGCCGGauGGUGAC-GCCGCUc -3' miRNA: 3'- -GCGG----CCGGCCgcUCGUUGaCGGCGAc -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 10852 | 0.67 | 0.329045 |
Target: 5'- uGCC-GCCGGCGAagcccagGCGGCgcagGCCGUc- -3' miRNA: 3'- gCGGcCGGCCGCU-------CGUUGa---CGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 60624 | 0.67 | 0.322285 |
Target: 5'- aCGCCaugcgcacGCUGGCGAGCGGCgagcaCCGCg- -3' miRNA: 3'- -GCGGc-------CGGCCGCUCGUUGac---GGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 50946 | 0.67 | 0.322285 |
Target: 5'- uGCCGGCCGcCGAGCuGaaGCCGaCg- -3' miRNA: 3'- gCGGCCGGCcGCUCGuUgaCGGC-Gac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 49883 | 0.67 | 0.322285 |
Target: 5'- aGCCGGCCGGaaaCGGuCGAUUGUCGUc- -3' miRNA: 3'- gCGGCCGGCC---GCUcGUUGACGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 35368 | 0.67 | 0.32154 |
Target: 5'- aGCaCGGCgCGGCccgauucgaccucGAGCAcgUGCCGCUc -3' miRNA: 3'- gCG-GCCG-GCCG-------------CUCGUugACGGCGAc -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 18562 | 0.67 | 0.320055 |
Target: 5'- uCGCCGaguuGCCGGCGuucaggccgagcccGGCGGacaUGCCGCc- -3' miRNA: 3'- -GCGGC----CGGCCGC--------------UCGUUg--ACGGCGac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 21382 | 0.67 | 0.314896 |
Target: 5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3' miRNA: 3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 8954 | 0.67 | 0.314896 |
Target: 5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3' miRNA: 3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 55508 | 0.67 | 0.314164 |
Target: 5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3' miRNA: 3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5' |
|||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 63567 | 0.67 | 0.307636 |
Target: 5'- cCGCCGccGCCGGCGguAGCGugUcuggcuccGCCGCc- -3' miRNA: 3'- -GCGGC--CGGCCGC--UCGUugA--------CGGCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home