miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 11005 0.7 0.188501
Target:  5'- uCGCaCGGCUGacgaGCGAgGCGGCUGUCGCg- -3'
miRNA:   3'- -GCG-GCCGGC----CGCU-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11103 0.71 0.157492
Target:  5'- gCGUCGGCCGGCG-GCcuucCUGCUcgaGCUGc -3'
miRNA:   3'- -GCGGCCGGCCGCuCGuu--GACGG---CGAC- -5'
23874 3' -63.1 NC_005262.1 + 11648 0.71 0.165848
Target:  5'- gGCgGcGCCGGCGucGC-GCUGCaCGCUGg -3'
miRNA:   3'- gCGgC-CGGCCGCu-CGuUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 12115 0.66 0.345223
Target:  5'- gCGCC-GCCGugcgcGCGAGCAGaucGCCGCg- -3'
miRNA:   3'- -GCGGcCGGC-----CGCUCGUUga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12525 0.71 0.157492
Target:  5'- cCGgCGGCCGGUGAGguuCAGCUuGCCGUc- -3'
miRNA:   3'- -GCgGCCGGCCGCUC---GUUGA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12550 0.66 0.377591
Target:  5'- gCGgCGGCaggucgCGGCG-GCGcucgucgaGCUGCUGCUGc -3'
miRNA:   3'- -GCgGCCG------GCCGCuCGU--------UGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 12614 0.67 0.307636
Target:  5'- aGCgGGCCGccGCGucGuCGGCUGCCuGCUGc -3'
miRNA:   3'- gCGgCCGGC--CGCu-C-GUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 13798 0.74 0.097897
Target:  5'- gCGCCGGCgCGGCuucaucggcggGAGCGGgcGCCGCUGu -3'
miRNA:   3'- -GCGGCCG-GCCG-----------CUCGUUgaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 13863 0.66 0.361155
Target:  5'- aCGCCauccgGGCCGGuCGucaGGCGguACUGCUGCc- -3'
miRNA:   3'- -GCGG-----CCGGCC-GC---UCGU--UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 13928 0.69 0.219236
Target:  5'- -uCCGGCCGGCuGAGCuGCUuccgguaccGCCGCc- -3'
miRNA:   3'- gcGGCCGGCCG-CUCGuUGA---------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 13963 0.67 0.303342
Target:  5'- aGCCgcuggugcaccagggGGCCGGUGGGCGAa---CGCUGg -3'
miRNA:   3'- gCGG---------------CCGGCCGCUCGUUgacgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 14001 0.7 0.210644
Target:  5'- gGCCGGacggugcaggggcguCCGGCGcGGCAGCgGCCGgaGc -3'
miRNA:   3'- gCGGCC---------------GGCCGC-UCGUUGaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 14055 0.7 0.193346
Target:  5'- gCGCC-GCCGGCGucgguGCGGCUucgGCCGCc- -3'
miRNA:   3'- -GCGGcCGGCCGCu----CGUUGA---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15130 0.75 0.08328
Target:  5'- gCGCUGGCCGGCagcuugucGAGCucCUGCUGCg- -3'
miRNA:   3'- -GCGGCCGGCCG--------CUCGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15440 0.66 0.36931
Target:  5'- aGCCGGCC-GCcAGCAGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGcCGcUCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 15769 0.66 0.36685
Target:  5'- uGCCGGCCGGCGAcuuccucaucuucgGCGGCaaccCCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCU--------------CGUUGac--GGCgac -5'
23874 3' -63.1 NC_005262.1 + 16055 0.71 0.173262
Target:  5'- uCGCCgcGGCCGGCGgcgcaccagauacaGGCGGCgaGCCGCc- -3'
miRNA:   3'- -GCGG--CCGGCCGC--------------UCGUUGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16405 0.66 0.337449
Target:  5'- gGCCGGCCGcCGGGauuCUgcGCCGCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCguuGA--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16963 0.69 0.219236
Target:  5'- aCGCCGGCgcgcuuuucuCGGCGAGCGcGCggGCCuGCa- -3'
miRNA:   3'- -GCGGCCG----------GCCGCUCGU-UGa-CGG-CGac -5'
23874 3' -63.1 NC_005262.1 + 16996 0.67 0.286626
Target:  5'- cCGCCGGCCGaGCGcGCG-CUcGUCguGCUGa -3'
miRNA:   3'- -GCGGCCGGC-CGCuCGUuGA-CGG--CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.