miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 44337 0.66 0.352329
Target:  5'- gGCCGuCCGGUGAGCAucgaggccaacGCccagcgcuucagaUGCCGCg- -3'
miRNA:   3'- gCGGCcGGCCGCUCGU-----------UG-------------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 39502 0.66 0.337449
Target:  5'- aGCaucaGGgCGGCGAGCGucgcgccgAUUGCUGCg- -3'
miRNA:   3'- gCGg---CCgGCCGCUCGU--------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15769 0.66 0.36685
Target:  5'- uGCCGGCCGGCGAcuuccucaucuucgGCGGCaaccCCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCU--------------CGUUGac--GGCgac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16405 0.66 0.337449
Target:  5'- gGCCGGCCGcCGGGauuCUgcGCCGCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCguuGA--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12115 0.66 0.345223
Target:  5'- gCGCC-GCCGugcgcGCGAGCAGaucGCCGCg- -3'
miRNA:   3'- -GCGGcCGGC-----CGCUCGUUga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48039 0.66 0.345223
Target:  5'- uCGCCGGCCGGC-AGguGCU-UCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcUCguUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 60624 0.67 0.322285
Target:  5'- aCGCCaugcgcacGCUGGCGAGCGGCgagcaCCGCg- -3'
miRNA:   3'- -GCGGc-------CGGCCGCUCGUUGac---GGCGac -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16996 0.67 0.286626
Target:  5'- cCGCCGGCCGaGCGcGCG-CUcGUCguGCUGa -3'
miRNA:   3'- -GCGGCCGGC-CGCuCGUuGA-CGG--CGAC- -5'
23874 3' -63.1 NC_005262.1 + 38521 0.67 0.286626
Target:  5'- gGCaCGGCCGGCaaGAGCuacACgGUCGCg- -3'
miRNA:   3'- gCG-GCCGGCCG--CUCGu--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52704 0.67 0.300504
Target:  5'- cCGCCGGCCGaCGccggacgaGGCcGC-GCUGCUGa -3'
miRNA:   3'- -GCGGCCGGCcGC--------UCGuUGaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 13963 0.67 0.303342
Target:  5'- aGCCgcuggugcaccagggGGCCGGUGGGCGAa---CGCUGg -3'
miRNA:   3'- gCGG---------------CCGGCCGCUCGUUgacgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50446 0.67 0.329803
Target:  5'- uCGUCGuGCCGcGCGAGgagGACgGCCGCa- -3'
miRNA:   3'- -GCGGC-CGGC-CGCUCg--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 1470 0.67 0.307636
Target:  5'- aCGCCGcccgcucgucuGCCGGC-----GCUGCCGCUGc -3'
miRNA:   3'- -GCGGC-----------CGGCCGcucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50946 0.67 0.322285
Target:  5'- uGCCGGCCGcCGAGCuGaaGCCGaCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCGuUgaCGGC-Gac -5'
23874 3' -63.1 NC_005262.1 + 30880 0.67 0.329803
Target:  5'- uCGCCgagcGGCCGGauGGUGAC-GCCGCUc -3'
miRNA:   3'- -GCGG----CCGGCCgcUCGUUGaCGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 60500 0.67 0.293501
Target:  5'- aCGCCgGGCCGcGCGGcGCAg--GCCGCc- -3'
miRNA:   3'- -GCGG-CCGGC-CGCU-CGUugaCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.