miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 48297 0.72 0.131167
Target:  5'- aGCUcGCCGGUGAGCgAGCcGCCGCg- -3'
miRNA:   3'- gCGGcCGGCCGCUCG-UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 20179 0.72 0.138607
Target:  5'- gCGCCGguGCCGGCGAGCGucaccugcgcgauauCUGCguucgCGCUGa -3'
miRNA:   3'- -GCGGC--CGGCCGCUCGUu--------------GACG-----GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 45265 0.72 0.141912
Target:  5'- uGCCGGUCGGggcuauagcuuCGAGguGCUGCgCGCUc -3'
miRNA:   3'- gCGGCCGGCC-----------GCUCguUGACG-GCGAc -5'
23874 3' -63.1 NC_005262.1 + 28246 0.72 0.14567
Target:  5'- -cCCGcGCCGGCGAGCGACaucGCgGCUu -3'
miRNA:   3'- gcGGC-CGGCCGCUCGUUGa--CGgCGAc -5'
23874 3' -63.1 NC_005262.1 + 521 0.72 0.14567
Target:  5'- aGCCGGCCgucaagcaGGCG-GCGGCUGCCa--- -3'
miRNA:   3'- gCGGCCGG--------CCGCuCGUUGACGGcgac -5'
23874 3' -63.1 NC_005262.1 + 49718 0.72 0.14567
Target:  5'- uGCCGGgCGGCGAaccgGCGGCcgaaGCCGCa- -3'
miRNA:   3'- gCGGCCgGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 53300 0.71 0.157492
Target:  5'- uGCUGGCCGccauGCuGGC-GCUGCUGCUGg -3'
miRNA:   3'- gCGGCCGGC----CGcUCGuUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 12525 0.71 0.157492
Target:  5'- cCGgCGGCCGGUGAGguuCAGCUuGCCGUc- -3'
miRNA:   3'- -GCgGCCGGCCGCUC---GUUGA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11103 0.71 0.157492
Target:  5'- gCGUCGGCCGGCG-GCcuucCUGCUcgaGCUGc -3'
miRNA:   3'- -GCGGCCGGCCGCuCGuu--GACGG---CGAC- -5'
23874 3' -63.1 NC_005262.1 + 56788 0.71 0.159132
Target:  5'- aGCUGGCCGGCcugaaggccgacgucGAGCGGCUGgaGCg- -3'
miRNA:   3'- gCGGCCGGCCG---------------CUCGUUGACggCGac -5'
23874 3' -63.1 NC_005262.1 + 52138 0.71 0.161621
Target:  5'- uGCCGGCCaGCGuGCAGCgcgacgccggcGCCGCc- -3'
miRNA:   3'- gCGGCCGGcCGCuCGUUGa----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11648 0.71 0.165848
Target:  5'- gGCgGcGCCGGCGucGC-GCUGCaCGCUGg -3'
miRNA:   3'- gCGgC-CGGCCGCu-CGuUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 33898 0.71 0.165848
Target:  5'- gCGUCGGCCGGCGgcccgaucgguAGCGGCggUGCCGa-- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGUUG--ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 44175 0.71 0.165848
Target:  5'- aGCgCGG-CGGCGAGCucaaUGCCGUUGu -3'
miRNA:   3'- gCG-GCCgGCCGCUCGuug-ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 49146 0.71 0.165848
Target:  5'- gGUCGGCaCGGUGGGCGuGCagGCCGCa- -3'
miRNA:   3'- gCGGCCG-GCCGCUCGU-UGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 34132 0.71 0.169737
Target:  5'- gGCgGGCUGcgcgggcGCGGGCGGCaUGCCGCUc -3'
miRNA:   3'- gCGgCCGGC-------CGCUCGUUG-ACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 57780 0.71 0.170174
Target:  5'- uGCUGGuuGGCGAGCAGagcGaCCGCa- -3'
miRNA:   3'- gCGGCCggCCGCUCGUUga-C-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 16055 0.71 0.173262
Target:  5'- uCGCCgcGGCCGGCGgcgcaccagauacaGGCGGCgaGCCGCc- -3'
miRNA:   3'- -GCGG--CCGGCCGC--------------UCGUUGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 1121 0.71 0.174601
Target:  5'- cCGCCucuugcucugcGGCCGcuGCGGGCuucgauGCUGCCGCg- -3'
miRNA:   3'- -GCGG-----------CCGGC--CGCUCGu-----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48042 0.7 0.18097
Target:  5'- aGCCGGCCGcGCccGCAAgcgcgucggucgcacCUGCCGCg- -3'
miRNA:   3'- gCGGCCGGC-CGcuCGUU---------------GACGGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.