miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 58766 1.08 0.000243
Target:  5'- gCGCCGGCCGGCGAGCAACUGCCGCUGg -3'
miRNA:   3'- -GCGGCCGGCCGCUCGUUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 60210 0.82 0.026175
Target:  5'- aGCCGGCCGGCGAGguCGGCaaGCUGCUGa -3'
miRNA:   3'- gCGGCCGGCCGCUC--GUUGa-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 41561 0.82 0.026175
Target:  5'- gGCCGGCCGGCGugGGCGGCgcgGCCGUg- -3'
miRNA:   3'- gCGGCCGGCCGC--UCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 57216 0.75 0.08328
Target:  5'- uGCCGGUCGGCGGcaucGCGACgcgcGCCGCc- -3'
miRNA:   3'- gCGGCCGGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15130 0.75 0.08328
Target:  5'- gCGCUGGCCGGCagcuugucGAGCucCUGCUGCg- -3'
miRNA:   3'- -GCGGCCGGCCG--------CUCGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 9967 0.75 0.085562
Target:  5'- gCGCCGcGCCGGUGGuCAGCucgaugcccgUGCCGCUGu -3'
miRNA:   3'- -GCGGC-CGGCCGCUcGUUG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 39588 0.75 0.090308
Target:  5'- uGCCGGCgCaGCGucGCGGCUGCCGCc- -3'
miRNA:   3'- gCGGCCG-GcCGCu-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 63691 0.74 0.096332
Target:  5'- uCGCCGGCCGGUGAcaugcgcagaagcguGCGGCgcgGCCGaCUu -3'
miRNA:   3'- -GCGGCCGGCCGCU---------------CGUUGa--CGGC-GAc -5'
23874 3' -63.1 NC_005262.1 + 13798 0.74 0.097897
Target:  5'- gCGCCGGCgCGGCuucaucggcggGAGCGGgcGCCGCUGu -3'
miRNA:   3'- -GCGGCCG-GCCG-----------CUCGUUgaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 30106 0.74 0.100558
Target:  5'- aCGCCGGCCGccGCGaAGCccacGAUcgUGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGC--CGC-UCG----UUG--ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 2816 0.73 0.113095
Target:  5'- gGCaCGGCCGacaggaacgcaucgaGCGAGUGAUUGUCGCUGu -3'
miRNA:   3'- gCG-GCCGGC---------------CGCUCGUUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 4836 0.73 0.114914
Target:  5'- cCGgCGGCCGGCuGGUucGACUGCUGCg- -3'
miRNA:   3'- -GCgGCCGGCCGcUCG--UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 46128 0.73 0.122467
Target:  5'- uCGCCGcuuccagcucggcgcGCUGGCGGGCGAucuCUGCCuGCUGc -3'
miRNA:   3'- -GCGGC---------------CGGCCGCUCGUU---GACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 57494 0.73 0.124425
Target:  5'- aGgCGGCCGGCGAGCGcaagaaggcgGCgaaggccgaGCUGCUGa -3'
miRNA:   3'- gCgGCCGGCCGCUCGU----------UGa--------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 42380 0.73 0.124425
Target:  5'- aCGUCGGCCGucGCGAGCucgGACcagUGCCGCa- -3'
miRNA:   3'- -GCGGCCGGC--CGCUCG---UUG---ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 60110 0.73 0.127418
Target:  5'- gCGCCGGCaucaccgucgucaCGGCcAGCGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCG-------------GCCGcUCGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 17134 0.73 0.127755
Target:  5'- gCGUCGguGCCGGCGccauGCUGCCGCUGu -3'
miRNA:   3'- -GCGGC--CGGCCGCucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 3598 0.73 0.127755
Target:  5'- uCGCCGGCCGGCuccuuGcCggUUGCCGCc- -3'
miRNA:   3'- -GCGGCCGGCCGcu---C-GuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 17259 0.73 0.127755
Target:  5'- gCGgCGGCCGGCGccGCGcuggGCUGCUGCg- -3'
miRNA:   3'- -GCgGCCGGCCGCu-CGU----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50283 0.72 0.131167
Target:  5'- gCGCCGGCCGaGCccGUGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCGGC-CGcuCGUUGaCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.