miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 27829 0.7 0.198301
Target:  5'- aGCgCGGCCGGUcugacuucaAGguGCUGCCGCg- -3'
miRNA:   3'- gCG-GCCGGCCGc--------UCguUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48042 0.7 0.18097
Target:  5'- aGCCGGCCGcGCccGCAAgcgcgucggucgcacCUGCCGCg- -3'
miRNA:   3'- gCGGCCGGC-CGcuCGUU---------------GACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5041 0.7 0.183763
Target:  5'- uCGCCGGCCGGCGccugaucggcgGGCAggcccGCgGCgGCg- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGU-----UGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58870 0.7 0.183763
Target:  5'- aCGCCGGCgcagccCGcGCGuuGGCuGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCG------GC-CGC--UCGuUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49753 0.7 0.185645
Target:  5'- aCGCCGG-CGGCGcccGCGcccgaggcuccggccGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGCCGCu--CGU---------------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11005 0.7 0.188501
Target:  5'- uCGCaCGGCUGacgaGCGAgGCGGCUGUCGCg- -3'
miRNA:   3'- -GCG-GCCGGC----CGCU-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23406 0.7 0.193346
Target:  5'- aGgCGGCgaugCGGCGGGCAGCaugaGCCGCg- -3'
miRNA:   3'- gCgGCCG----GCCGCUCGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 10781 0.7 0.193346
Target:  5'- gCGCCGGgCGcGCGGuacugcugcGCgAGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGC-CGCU---------CG-UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 1121 0.71 0.174601
Target:  5'- cCGCCucuugcucugcGGCCGcuGCGGGCuucgauGCUGCCGCg- -3'
miRNA:   3'- -GCGG-----------CCGGC--CGCUCGu-----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 57780 0.71 0.170174
Target:  5'- uGCUGGuuGGCGAGCAGagcGaCCGCa- -3'
miRNA:   3'- gCGGCCggCCGCUCGUUga-C-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 44175 0.71 0.165848
Target:  5'- aGCgCGG-CGGCGAGCucaaUGCCGUUGu -3'
miRNA:   3'- gCG-GCCgGCCGCUCGuug-ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 57216 0.75 0.08328
Target:  5'- uGCCGGUCGGCGGcaucGCGACgcgcGCCGCc- -3'
miRNA:   3'- gCGGCCGGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30106 0.74 0.100558
Target:  5'- aCGCCGGCCGccGCGaAGCccacGAUcgUGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGC--CGC-UCG----UUG--ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50283 0.72 0.131167
Target:  5'- gCGCCGGCCGaGCccGUGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCGGC-CGcuCGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49718 0.72 0.14567
Target:  5'- uGCCGGgCGGCGAaccgGCGGCcgaaGCCGCa- -3'
miRNA:   3'- gCGGCCgGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 56788 0.71 0.159132
Target:  5'- aGCUGGCCGGCcugaaggccgacgucGAGCGGCUGgaGCg- -3'
miRNA:   3'- gCGGCCGGCCG---------------CUCGUUGACggCGac -5'
23874 3' -63.1 NC_005262.1 + 49146 0.71 0.165848
Target:  5'- gGUCGGCaCGGUGGGCGuGCagGCCGCa- -3'
miRNA:   3'- gCGGCCG-GCCGCUCGU-UGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11648 0.71 0.165848
Target:  5'- gGCgGcGCCGGCGucGC-GCUGCaCGCUGg -3'
miRNA:   3'- gCGgC-CGGCCGCu-CGuUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 33898 0.71 0.165848
Target:  5'- gCGUCGGCCGGCGgcccgaucgguAGCGGCggUGCCGa-- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGUUG--ACGGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.