miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 15440 0.66 0.36931
Target:  5'- aGCCGGCC-GCcAGCAGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGcCGcUCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 21382 0.67 0.314896
Target:  5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3'
miRNA:   3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58766 1.08 0.000243
Target:  5'- gCGCCGGCCGGCGAGCAACUGCCGCUGg -3'
miRNA:   3'- -GCGGCCGGCCGCUCGUUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58716 0.66 0.353125
Target:  5'- cCGCCGaGCCGGuCGcacGCGccGCcGCCGCg- -3'
miRNA:   3'- -GCGGC-CGGCC-GCu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 47408 0.66 0.353125
Target:  5'- gGCCGGCCggGGCGGGUucaaAACUgGuuGCc- -3'
miRNA:   3'- gCGGCCGG--CCGCUCG----UUGA-CggCGac -5'
23874 3' -63.1 NC_005262.1 + 44337 0.66 0.352329
Target:  5'- gGCCGuCCGGUGAGCAucgaggccaacGCccagcgcuucagaUGCCGCg- -3'
miRNA:   3'- gCGGCcGGCCGCUCGU-----------UG-------------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 59198 0.66 0.345223
Target:  5'- cCGCCcguuccuGCgGGCgcucacgcccGAGCAGCgccGCCGCUGg -3'
miRNA:   3'- -GCGGc------CGgCCG----------CUCGUUGa--CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 48039 0.66 0.345223
Target:  5'- uCGCCGGCCGGC-AGguGCU-UCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcUCguUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 18562 0.67 0.320055
Target:  5'- uCGCCGaguuGCCGGCGuucaggccgagcccGGCGGacaUGCCGCc- -3'
miRNA:   3'- -GCGGC----CGGCCGC--------------UCGUUg--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 39502 0.66 0.337449
Target:  5'- aGCaucaGGgCGGCGAGCGucgcgccgAUUGCUGCg- -3'
miRNA:   3'- gCGg---CCgGCCGCUCGU--------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52304 0.66 0.345223
Target:  5'- aGCCGaGCuCGGCGAcGCGGCccaugUGCuCGCg- -3'
miRNA:   3'- gCGGC-CG-GCCGCU-CGUUG-----ACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 28542 0.66 0.36931
Target:  5'- uGCCGuucGCCGG-GGGCGcccaGCCGCUGc -3'
miRNA:   3'- gCGGC---CGGCCgCUCGUuga-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 10852 0.67 0.329045
Target:  5'- uGCC-GCCGGCGAagcccagGCGGCgcagGCCGUc- -3'
miRNA:   3'- gCGGcCGGCCGCU-------CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50221 0.66 0.365217
Target:  5'- aCGCCGgcuuccaGCCGaGCGgaugccaAGCAACggucgcggccucgaUGCCGCUGc -3'
miRNA:   3'- -GCGGC-------CGGC-CGC-------UCGUUG--------------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 38260 0.66 0.345223
Target:  5'- cCGCCGcGCaCGGaCGucGCGACgcggaUGCUGCUGu -3'
miRNA:   3'- -GCGGC-CG-GCC-GCu-CGUUG-----ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 35368 0.67 0.32154
Target:  5'- aGCaCGGCgCGGCccgauucgaccucGAGCAcgUGCCGCUc -3'
miRNA:   3'- gCG-GCCG-GCCG-------------CUCGUugACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 13863 0.66 0.361155
Target:  5'- aCGCCauccgGGCCGGuCGucaGGCGguACUGCUGCc- -3'
miRNA:   3'- -GCGG-----CCGGCC-GC---UCGU--UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 843 0.66 0.353125
Target:  5'- uGUCGGCCGGa-AGCGAC-GCgCGCa- -3'
miRNA:   3'- gCGGCCGGCCgcUCGUUGaCG-GCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.