miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 238 0.69 0.234413
Target:  5'- cCGCCGGCggCGGCGGGaCAuuucgcgcggacguACacgcgcugagUGCCGCUGc -3'
miRNA:   3'- -GCGGCCG--GCCGCUC-GU--------------UG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 521 0.72 0.14567
Target:  5'- aGCCGGCCgucaagcaGGCG-GCGGCUGCCa--- -3'
miRNA:   3'- gCGGCCGG--------CCGCuCGUUGACGGcgac -5'
23874 3' -63.1 NC_005262.1 + 843 0.66 0.353125
Target:  5'- uGUCGGCCGGa-AGCGAC-GCgCGCa- -3'
miRNA:   3'- gCGGCCGGCCgcUCGUUGaCG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 1121 0.71 0.174601
Target:  5'- cCGCCucuugcucugcGGCCGcuGCGGGCuucgauGCUGCCGCg- -3'
miRNA:   3'- -GCGG-----------CCGGC--CGCUCGu-----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 1470 0.67 0.307636
Target:  5'- aCGCCGcccgcucgucuGCCGGC-----GCUGCCGCUGc -3'
miRNA:   3'- -GCGGC-----------CGGCCGcucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 2816 0.73 0.113095
Target:  5'- gGCaCGGCCGacaggaacgcaucgaGCGAGUGAUUGUCGCUGu -3'
miRNA:   3'- gCG-GCCGGC---------------CGCUCGUUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 3598 0.73 0.127755
Target:  5'- uCGCCGGCCGGCuccuuGcCggUUGCCGCc- -3'
miRNA:   3'- -GCGGCCGGCCGcu---C-GuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 4836 0.73 0.114914
Target:  5'- cCGgCGGCCGGCuGGUucGACUGCUGCg- -3'
miRNA:   3'- -GCgGCCGGCCGcUCG--UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5041 0.7 0.183763
Target:  5'- uCGCCGGCCGGCGccugaucggcgGGCAggcccGCgGCgGCg- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGU-----UGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 5321 0.68 0.254149
Target:  5'- aGCUGGCCGGCagGAGCuuCgcaCCGCg- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGuuGac-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 5986 0.7 0.203365
Target:  5'- uGCCGGCCGGCu----GCUGCuCGUUGc -3'
miRNA:   3'- gCGGCCGGCCGcucguUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 6888 0.69 0.224757
Target:  5'- gGCCuugaucucGCCGGCGAGCGugUuGUCGCg- -3'
miRNA:   3'- gCGGc-------CGGCCGCUCGUugA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 8235 0.66 0.34444
Target:  5'- aGCCGGCCGGguCGAugcccuugauguuGCu-CUGCUGCg- -3'
miRNA:   3'- gCGGCCGGCC--GCU-------------CGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 9932 0.7 0.208542
Target:  5'- uGUCGGCCGGCuuGAGCGcgaucuGCUuGCCGUc- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGU------UGA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 9967 0.75 0.085562
Target:  5'- gCGCCGcGCCGGUGGuCAGCucgaugcccgUGCCGCUGu -3'
miRNA:   3'- -GCGGC-CGGCCGCUcGUUG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 10456 0.7 0.188501
Target:  5'- uCGCgCGGUCGGCGAgGUAGCgGCgCGCg- -3'
miRNA:   3'- -GCG-GCCGGCCGCU-CGUUGaCG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 10781 0.7 0.193346
Target:  5'- gCGCCGGgCGcGCGGuacugcugcGCgAGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGC-CGCU---------CG-UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 10852 0.67 0.329045
Target:  5'- uGCC-GCCGGCGAagcccagGCGGCgcagGCCGUc- -3'
miRNA:   3'- gCGGcCGGCCGCU-------CGUUGa---CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.