miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 63691 0.74 0.096332
Target:  5'- uCGCCGGCCGGUGAcaugcgcagaagcguGCGGCgcgGCCGaCUu -3'
miRNA:   3'- -GCGGCCGGCCGCU---------------CGUUGa--CGGC-GAc -5'
23874 3' -63.1 NC_005262.1 + 63567 0.67 0.307636
Target:  5'- cCGCCGccGCCGGCGguAGCGugUcuggcuccGCCGCc- -3'
miRNA:   3'- -GCGGC--CGGCCGC--UCGUugA--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 63060 0.66 0.377591
Target:  5'- gCGCCGGCaCGucaucGCGGGCGAguaUGCgGCg- -3'
miRNA:   3'- -GCGGCCG-GC-----CGCUCGUUg--ACGgCGac -5'
23874 3' -63.1 NC_005262.1 + 63018 0.66 0.345223
Target:  5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3'
miRNA:   3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5'
23874 3' -63.1 NC_005262.1 + 62571 0.69 0.230395
Target:  5'- gGUCGGaggCGGCGAGCu-UUGCCGCc- -3'
miRNA:   3'- gCGGCCg--GCCGCUCGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 61162 0.68 0.254149
Target:  5'- gCGgCGGCgGGCGAGCuGACggGCgCGCg- -3'
miRNA:   3'- -GCgGCCGgCCGCUCG-UUGa-CG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 60833 0.67 0.307636
Target:  5'- gCGCCGGCCuacgcgaucGGCGuGGCGAUgGCCGa-- -3'
miRNA:   3'- -GCGGCCGG---------CCGC-UCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 60624 0.67 0.322285
Target:  5'- aCGCCaugcgcacGCUGGCGAGCGGCgagcaCCGCg- -3'
miRNA:   3'- -GCGGc-------CGGCCGCUCGUUGac---GGCGac -5'
23874 3' -63.1 NC_005262.1 + 60500 0.67 0.293501
Target:  5'- aCGCCgGGCCGcGCGGcGCAg--GCCGCc- -3'
miRNA:   3'- -GCGG-CCGGC-CGCU-CGUugaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 60210 0.82 0.026175
Target:  5'- aGCCGGCCGGCGAGguCGGCaaGCUGCUGa -3'
miRNA:   3'- gCGGCCGGCCGCUC--GUUGa-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 60110 0.73 0.127418
Target:  5'- gCGCCGGCaucaccgucgucaCGGCcAGCGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCG-------------GCCGcUCGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 59198 0.66 0.345223
Target:  5'- cCGCCcguuccuGCgGGCgcucacgcccGAGCAGCgccGCCGCUGg -3'
miRNA:   3'- -GCGGc------CGgCCG----------CUCGUUGa--CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58870 0.7 0.183763
Target:  5'- aCGCCGGCgcagccCGcGCGuuGGCuGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCG------GC-CGC--UCGuUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58766 1.08 0.000243
Target:  5'- gCGCCGGCCGGCGAGCAACUGCCGCUGg -3'
miRNA:   3'- -GCGGCCGGCCGCUCGUUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58716 0.66 0.353125
Target:  5'- cCGCCGaGCCGGuCGcacGCGccGCcGCCGCg- -3'
miRNA:   3'- -GCGGC-CGGCC-GCu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58610 0.68 0.254149
Target:  5'- gCGCCGGCCGcgcccGCGcccGCGACgccgGCCGUc- -3'
miRNA:   3'- -GCGGCCGGC-----CGCu--CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 57780 0.71 0.170174
Target:  5'- uGCUGGuuGGCGAGCAGagcGaCCGCa- -3'
miRNA:   3'- gCGGCCggCCGCUCGUUga-C-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 57494 0.73 0.124425
Target:  5'- aGgCGGCCGGCGAGCGcaagaaggcgGCgaaggccgaGCUGCUGa -3'
miRNA:   3'- gCgGCCGGCCGCUCGU----------UGa--------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 57216 0.75 0.08328
Target:  5'- uGCCGGUCGGCGGcaucGCGACgcgcGCCGCc- -3'
miRNA:   3'- gCGGCCGGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 56909 0.69 0.236152
Target:  5'- aCGCUcGCCGGCGAGaucaagGCCGCg- -3'
miRNA:   3'- -GCGGcCGGCCGCUCguuga-CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.