miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 17134 0.73 0.127755
Target:  5'- gCGUCGguGCCGGCGccauGCUGCCGCUGu -3'
miRNA:   3'- -GCGGC--CGGCCGCucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 17259 0.73 0.127755
Target:  5'- gCGgCGGCCGGCGccGCGcuggGCUGCUGCg- -3'
miRNA:   3'- -GCgGCCGGCCGCu-CGU----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 18381 0.68 0.260394
Target:  5'- aGcCCGGCCGaGUuuuGcGCGGCUGCCuGCUGc -3'
miRNA:   3'- gC-GGCCGGC-CG---CuCGUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 18562 0.67 0.320055
Target:  5'- uCGCCGaguuGCCGGCGuucaggccgagcccGGCGGacaUGCCGCc- -3'
miRNA:   3'- -GCGGC----CGGCCGC--------------UCGUUg--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 19968 0.7 0.203365
Target:  5'- gCGCgCGGCCGGCccGCGGCcgugucGCCGCg- -3'
miRNA:   3'- -GCG-GCCGGCCGcuCGUUGa-----CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 20179 0.72 0.138607
Target:  5'- gCGCCGguGCCGGCGAGCGucaccugcgcgauauCUGCguucgCGCUGa -3'
miRNA:   3'- -GCGGC--CGGCCGCUCGUu--------------GACG-----GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 21382 0.67 0.314896
Target:  5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3'
miRNA:   3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 22124 0.68 0.254149
Target:  5'- uGCCGguGCCGGCG-GCGAUgacggcGCCGCc- -3'
miRNA:   3'- gCGGC--CGGCCGCuCGUUGa-----CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 22247 0.69 0.219236
Target:  5'- aCGCCGGCCGGCcugcGCAucAC-GCCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23002 0.68 0.266121
Target:  5'- aGCUGGCCGuGCGGcaugaauGCGGCUuCCGCg- -3'
miRNA:   3'- gCGGCCGGC-CGCU-------CGUUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23240 0.69 0.213831
Target:  5'- cCGCCGGuguugcCCGGCGcGUAAgaGCCGCc- -3'
miRNA:   3'- -GCGGCC------GGCCGCuCGUUgaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23406 0.7 0.193346
Target:  5'- aGgCGGCgaugCGGCGGGCAGCaugaGCCGCg- -3'
miRNA:   3'- gCgGCCG----GCCGCUCGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 24884 0.68 0.273258
Target:  5'- cCGCCGGCgcgugacaGGCGAGCucgGCcaGCCGgaGg -3'
miRNA:   3'- -GCGGCCGg-------CCGCUCGu--UGa-CGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 27829 0.7 0.198301
Target:  5'- aGCgCGGCCGGUcugacuucaAGguGCUGCCGCg- -3'
miRNA:   3'- gCG-GCCGGCCGc--------UCguUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 28246 0.72 0.14567
Target:  5'- -cCCGcGCCGGCGAGCGACaucGCgGCUu -3'
miRNA:   3'- gcGGC-CGGCCGCUCGUUGa--CGgCGAc -5'
23874 3' -63.1 NC_005262.1 + 28542 0.66 0.36931
Target:  5'- uGCCGuucGCCGG-GGGCGcccaGCCGCUGc -3'
miRNA:   3'- gCGGC---CGGCCgCUCGUuga-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 29632 0.68 0.248028
Target:  5'- aCGCCGcaaCCGGCaucggcagcGAGCGGCaUGCCGCc- -3'
miRNA:   3'- -GCGGCc--GGCCG---------CUCGUUG-ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 29748 0.68 0.260394
Target:  5'- -uCUGGUCGuCGAGCAACUGCCGa-- -3'
miRNA:   3'- gcGGCCGGCcGCUCGUUGACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 30106 0.74 0.100558
Target:  5'- aCGCCGGCCGccGCGaAGCccacGAUcgUGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGC--CGC-UCG----UUG--ACGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.