Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23875 | 3' | -55.1 | NC_005262.1 | + | 39993 | 0.66 | 0.72769 |
Target: 5'- cGCGUCGUCucgauCGUGGUGCGcuucGCa -3' miRNA: 3'- cCGCAGUAGuuc--GCGCCACGCuu--CGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 38512 | 0.69 | 0.597702 |
Target: 5'- uGGCGggccuUCAggaUCAGGuUGCGGUGCcaGAGGCg -3' miRNA: 3'- -CCGC-----AGU---AGUUC-GCGCCACG--CUUCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 31165 | 0.66 | 0.768932 |
Target: 5'- cGCGcaAUCGccauacGGCGUGGUGCGcuGCUg -3' miRNA: 3'- cCGCagUAGU------UCGCGCCACGCuuCGA- -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 17342 | 0.66 | 0.768932 |
Target: 5'- cGGCGcggCAuUCGgguccGGCGCGG-GCGgcGCg -3' miRNA: 3'- -CCGCa--GU-AGU-----UCGCGCCaCGCuuCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 59957 | 0.66 | 0.768932 |
Target: 5'- aGCGgcaCGUCAcGCGCGGgGCGcucGGCa -3' miRNA: 3'- cCGCa--GUAGUuCGCGCCaCGCu--UCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 14016 | 0.66 | 0.768932 |
Target: 5'- gGGCGUCc---GGCGCGGcagcgGcCGGAGCc -3' miRNA: 3'- -CCGCAGuaguUCGCGCCa----C-GCUUCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 57296 | 0.66 | 0.757782 |
Target: 5'- cGGCGcgcugaUCGUCGAGCG-GGuUGCGAacuucugGGCc -3' miRNA: 3'- -CCGC------AGUAGUUCGCgCC-ACGCU-------UCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 33816 | 0.66 | 0.73817 |
Target: 5'- uGGCGUCGUC---CGUGGUGCcaGAuuuGGCa -3' miRNA: 3'- -CCGCAGUAGuucGCGCCACG--CU---UCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 14053 | 0.66 | 0.73817 |
Target: 5'- gGGCG-CcgCcGGCGuCGGUGCGGcuucGGCc -3' miRNA: 3'- -CCGCaGuaGuUCGC-GCCACGCU----UCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 12566 | 0.68 | 0.663223 |
Target: 5'- cGGCGcgCAUgagGAGCcCGGUGCGAucAGCa -3' miRNA: 3'- -CCGCa-GUAg--UUCGcGCCACGCU--UCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 31892 | 0.67 | 0.706459 |
Target: 5'- cGGCG-CGUCGAGCG-GGUugcccGCGuAGCc -3' miRNA: 3'- -CCGCaGUAGUUCGCgCCA-----CGCuUCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 6867 | 0.67 | 0.710731 |
Target: 5'- cGGCGUgCGcuucUCGAGCGCGGccuugaucucgccgGCG-AGCg -3' miRNA: 3'- -CCGCA-GU----AGUUCGCGCCa-------------CGCuUCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 22668 | 0.66 | 0.72769 |
Target: 5'- cGUGUCGUcCGAGCGCGccGUGAcGCg -3' miRNA: 3'- cCGCAGUA-GUUCGCGCcaCGCUuCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 16083 | 0.67 | 0.706459 |
Target: 5'- aGGCGgcgagCcgCcgcccGGCGCGGUGCuuGGCg -3' miRNA: 3'- -CCGCa----GuaGu----UCGCGCCACGcuUCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 56254 | 0.66 | 0.72769 |
Target: 5'- aGGaUGUCGUCGAGCGCGccgacGCGccGCc -3' miRNA: 3'- -CC-GCAGUAGUUCGCGCca---CGCuuCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 46720 | 0.67 | 0.717116 |
Target: 5'- cGCGUCGaCGGGCGCGccuaucggcgccGUGCGcgcgacGAGCUc -3' miRNA: 3'- cCGCAGUaGUUCGCGC------------CACGC------UUCGA- -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 46883 | 0.68 | 0.663223 |
Target: 5'- ---uUCAUguGGUGCGGUGCGguGCg -3' miRNA: 3'- ccgcAGUAguUCGCGCCACGCuuCGa -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 58459 | 1.09 | 0.001203 |
Target: 5'- gGGCGUCAUCAAGCGCGGUGCGAAGCUc -3' miRNA: 3'- -CCGCAGUAGUUCGCGCCACGCUUCGA- -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 30768 | 0.66 | 0.72769 |
Target: 5'- gGGCGguacgucagCAUCAGGCGCaGcuugGCGuuGGCUg -3' miRNA: 3'- -CCGCa--------GUAGUUCGCGcCa---CGCu-UCGA- -5' |
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23875 | 3' | -55.1 | NC_005262.1 | + | 14448 | 0.66 | 0.72769 |
Target: 5'- aGuCGUCAgCGAGCGCGGcGCGcgccuGCUc -3' miRNA: 3'- cC-GCAGUaGUUCGCGCCaCGCuu---CGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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