miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 13494 0.66 0.489682
Target:  5'- gCCGGCUCCucaauccgcgcGGCCGUcacgggCUCGGCCgGCGc- -3'
miRNA:   3'- -GGUCGAGG-----------CUGGCG------GAGCUGG-CGCac -5'
23875 5' -60.6 NC_005262.1 + 41510 0.66 0.483883
Target:  5'- gCCAGCUCgGGCCacucucugcggggacGUauggCGACgGCGUGa -3'
miRNA:   3'- -GGUCGAGgCUGG---------------CGga--GCUGgCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 41161 0.66 0.480035
Target:  5'- gCAGCgCgCGcaggagggcACCGCCgCGAUCGCGUGc -3'
miRNA:   3'- gGUCGaG-GC---------UGGCGGaGCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 15338 0.66 0.480035
Target:  5'- aCAGCUUCGACCaGUCgcaGcCCGCGg- -3'
miRNA:   3'- gGUCGAGGCUGG-CGGag-CuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 35927 0.66 0.480035
Target:  5'- -uGGCU-CGGCCGCCUUG-CCGcCGUc -3'
miRNA:   3'- ggUCGAgGCUGGCGGAGCuGGC-GCAc -5'
23875 5' -60.6 NC_005262.1 + 31631 0.66 0.480035
Target:  5'- gCGGCaagCCGACCuaCggCGAugcCCGCGUGg -3'
miRNA:   3'- gGUCGa--GGCUGGcgGa-GCU---GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 18010 0.66 0.480035
Target:  5'- aUCAGCacgCCG-CCGCCcuUCG-CCGCGa- -3'
miRNA:   3'- -GGUCGa--GGCuGGCGG--AGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 39595 0.67 0.470483
Target:  5'- gCAGCgUCgCGgcuGCCGCCUCGGgCGUGa- -3'
miRNA:   3'- gGUCG-AG-GC---UGGCGGAGCUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 29050 0.67 0.470483
Target:  5'- gCCGGCa-CGACgCGCaccguguucggCUCGACCuGCGUGa -3'
miRNA:   3'- -GGUCGagGCUG-GCG-----------GAGCUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 4670 0.67 0.470483
Target:  5'- gCGGC-CCGGCCgguucGCCUCGG-CGCGg- -3'
miRNA:   3'- gGUCGaGGCUGG-----CGGAGCUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 46397 0.67 0.468584
Target:  5'- cCCAGCgucucggcauugUCGGCCGCCgagUCGACCgGCa-- -3'
miRNA:   3'- -GGUCGa-----------GGCUGGCGG---AGCUGG-CGcac -5'
23875 5' -60.6 NC_005262.1 + 17400 0.67 0.464798
Target:  5'- cCCAGC-CCGAcgaggcgcgccuguuCgGCCUUGAUUGCGUc -3'
miRNA:   3'- -GGUCGaGGCU---------------GgCGGAGCUGGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 21418 0.67 0.461028
Target:  5'- uCCgAGCUCgCGACgGCCgaCGuCCGCGa- -3'
miRNA:   3'- -GG-UCGAG-GCUGgCGGa-GCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 515 0.67 0.461028
Target:  5'- gCCAGCagCCGGCCGUCaagcaGGCgGCGg- -3'
miRNA:   3'- -GGUCGa-GGCUGGCGGag---CUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 52716 0.67 0.461028
Target:  5'- gCCAGCg--GGCCGCCcuUUGGCCGCu-- -3'
miRNA:   3'- -GGUCGaggCUGGCGG--AGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 58973 0.67 0.451674
Target:  5'- gCCGGCcgCCGGCgGCCUCacgccucCCGCGc- -3'
miRNA:   3'- -GGUCGa-GGCUGgCGGAGcu-----GGCGCac -5'
23875 5' -60.6 NC_005262.1 + 32914 0.67 0.450745
Target:  5'- gCGGCgucaccaUCCGGCCGCCggcgacuccUCGGCCGUc-- -3'
miRNA:   3'- gGUCG-------AGGCUGGCGG---------AGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 352 0.67 0.442426
Target:  5'- aCCGGCUCCGGCUGCUgggUGGCgaggaugucaGCGa- -3'
miRNA:   3'- -GGUCGAGGCUGGCGGa--GCUGg---------CGCac -5'
23875 5' -60.6 NC_005262.1 + 2289 0.67 0.439672
Target:  5'- uCCGGUcgagcgagaucauuUCCGACUGUUcCGGCCGCGc- -3'
miRNA:   3'- -GGUCG--------------AGGCUGGCGGaGCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 9314 0.67 0.439672
Target:  5'- gCGGCUUCGGCugcaccgcgagcagCGCCUCGACguUGCGcUGa -3'
miRNA:   3'- gGUCGAGGCUG--------------GCGGAGCUG--GCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.