miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 12076 0.67 0.424255
Target:  5'- aUCAGCUCCGGCUuuuuGaUCUCG-CCGCGc- -3'
miRNA:   3'- -GGUCGAGGCUGG----C-GGAGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 37167 0.67 0.424255
Target:  5'- gCCAGCUacgCGGgCGCUUCGAuuugcCCGCGg- -3'
miRNA:   3'- -GGUCGAg--GCUgGCGGAGCU-----GGCGCac -5'
23875 5' -60.6 NC_005262.1 + 17010 0.68 0.418891
Target:  5'- aUCGGCUcgccgCCGuugauaccgcgcgucGCCGCCUguaCGACCgGCGUGg -3'
miRNA:   3'- -GGUCGA-----GGC---------------UGGCGGA---GCUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 16492 0.68 0.415338
Target:  5'- gCCAGCUUCaGCUuuGCCUCGccgaucuucGCCGCGg- -3'
miRNA:   3'- -GGUCGAGGcUGG--CGGAGC---------UGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 51385 0.68 0.415338
Target:  5'- gCCGGCcaaGGCCGCgCcUGACCGUGUGc -3'
miRNA:   3'- -GGUCGaggCUGGCG-GaGCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 49204 0.68 0.414453
Target:  5'- uCCGGCaugCUGGCCgagggcgGCCUCGGCgGCGc- -3'
miRNA:   3'- -GGUCGa--GGCUGG-------CGGAGCUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 37248 0.68 0.397855
Target:  5'- gCAGCgcgUCGGCCGCUUCGgagugGCCGCc-- -3'
miRNA:   3'- gGUCGa--GGCUGGCGGAGC-----UGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 51905 0.68 0.389292
Target:  5'- aCGGCaCCGACCGCUUCGcCgGCa-- -3'
miRNA:   3'- gGUCGaGGCUGGCGGAGCuGgCGcac -5'
23875 5' -60.6 NC_005262.1 + 47129 0.68 0.389292
Target:  5'- cCCGGCUgCGGCCaCUugaacuugUCGuCCGCGUGc -3'
miRNA:   3'- -GGUCGAgGCUGGcGG--------AGCuGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 28331 0.68 0.380851
Target:  5'- -uGGUUCCGGauGCC-CGugCGCGUGc -3'
miRNA:   3'- ggUCGAGGCUggCGGaGCugGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 12606 0.68 0.380851
Target:  5'- gCGGCUCCagcgGGCCGCCgcgucgUCGGCUGCcUGc -3'
miRNA:   3'- gGUCGAGG----CUGGCGG------AGCUGGCGcAC- -5'
23875 5' -60.6 NC_005262.1 + 14027 0.68 0.380851
Target:  5'- gCGGCagCGGCCggaGCCUCGGgCGCGg- -3'
miRNA:   3'- gGUCGagGCUGG---CGGAGCUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 28080 0.68 0.372533
Target:  5'- gCCGGCUCgacauggaCGACUGCCgguacaUCuuCCGCGUGa -3'
miRNA:   3'- -GGUCGAG--------GCUGGCGG------AGcuGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 52775 0.69 0.356272
Target:  5'- aCGGCaucuuccCCGACCGCUaCGGCCGCu-- -3'
miRNA:   3'- gGUCGa------GGCUGGCGGaGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 35909 0.69 0.356272
Target:  5'- gCCGGCacagugUCGAUgGCCUCGAcuuugccuaCCGUGUGa -3'
miRNA:   3'- -GGUCGa-----GGCUGgCGGAGCU---------GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 19975 0.69 0.356272
Target:  5'- gCCGGCcCgCGGCCGUgUCG-CCGCGa- -3'
miRNA:   3'- -GGUCGaG-GCUGGCGgAGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 18899 0.69 0.351491
Target:  5'- uCCAGUcCCGACCcacggccuucucuugGuCCUUGGCCaGCGUGa -3'
miRNA:   3'- -GGUCGaGGCUGG---------------C-GGAGCUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 18735 0.69 0.34833
Target:  5'- cUCAGCUUCGGCgCGgCUCGGCgCGuCGUa -3'
miRNA:   3'- -GGUCGAGGCUG-GCgGAGCUG-GC-GCAc -5'
23875 5' -60.6 NC_005262.1 + 41847 0.69 0.34833
Target:  5'- aCCcuCUCUGACCGCCUUG--CGUGUGg -3'
miRNA:   3'- -GGucGAGGCUGGCGGAGCugGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 63726 0.69 0.34833
Target:  5'- aCguGCgugaCGugUGCCUCGAgCCGCGUc -3'
miRNA:   3'- -GguCGag--GCugGCGGAGCU-GGCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.