Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23876 | 3' | -58.3 | NC_005262.1 | + | 58334 | 1.1 | 0.000631 |
Target: 5'- uCGAACGGCGAGGUUCGCCGCGAGGUCa -3' miRNA: 3'- -GCUUGCCGCUCCAAGCGGCGCUCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 6628 | 0.8 | 0.085293 |
Target: 5'- aCGAGCGGCGAGGggUCGCCGgGGauGUCg -3' miRNA: 3'- -GCUUGCCGCUCCa-AGCGGCgCUc-CAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 10460 | 0.72 | 0.291621 |
Target: 5'- gCGGuCGGCGAGGUagCGgCGCGcgcGGUCg -3' miRNA: 3'- -GCUuGCCGCUCCAa-GCgGCGCu--CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 23477 | 0.71 | 0.328427 |
Target: 5'- aCGAAUggcugGGCGAGGUUCGCcCGCugacgcccGAGGa- -3' miRNA: 3'- -GCUUG-----CCGCUCCAAGCG-GCG--------CUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 16798 | 0.71 | 0.336188 |
Target: 5'- cCGGACGGCGAGcucauggaGUUCcugcacgacaGCCGCGAcuucgugaaGGUCg -3' miRNA: 3'- -GCUUGCCGCUC--------CAAG----------CGGCGCU---------CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 1990 | 0.7 | 0.368556 |
Target: 5'- uCGAGC-GCGAGGcaugCGCCGCGcAGG-Cg -3' miRNA: 3'- -GCUUGcCGCUCCaa--GCGGCGC-UCCaG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 51128 | 0.7 | 0.394198 |
Target: 5'- aGAACgGGCGcaGGGUUCGCCGCGc---- -3' miRNA: 3'- gCUUG-CCGC--UCCAAGCGGCGCuccag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 17206 | 0.7 | 0.402998 |
Target: 5'- gCGucuGCGGCGAGGacggCGCUGgCGucguGGUCg -3' miRNA: 3'- -GCu--UGCCGCUCCaa--GCGGC-GCu---CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 25686 | 0.69 | 0.420967 |
Target: 5'- -cGACGGcCGAGG---GCCGCGAGGg- -3' miRNA: 3'- gcUUGCC-GCUCCaagCGGCGCUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 57281 | 0.69 | 0.429209 |
Target: 5'- gCGuGACGGCGAGG-UCGgCGCGcugaucgucgagcGGGUUg -3' miRNA: 3'- -GC-UUGCCGCUCCaAGCgGCGC-------------UCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 39508 | 0.69 | 0.43941 |
Target: 5'- aGGGCGGCGAGcGUcgcgccgaUUGCUGCGAagaaGGUUu -3' miRNA: 3'- gCUUGCCGCUC-CA--------AGCGGCGCU----CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 9670 | 0.69 | 0.458306 |
Target: 5'- uCGAGCgaguaGGCGAGGg-CGCCGuCGAcGUCg -3' miRNA: 3'- -GCUUG-----CCGCUCCaaGCGGC-GCUcCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 61285 | 0.68 | 0.467916 |
Target: 5'- uCGAuCGGCGcGGccaGCCucGCGGGGUCg -3' miRNA: 3'- -GCUuGCCGCuCCaagCGG--CGCUCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 49230 | 0.68 | 0.477628 |
Target: 5'- -cGGCGGCGcgcaGUcCGCgCGCGAGGUCc -3' miRNA: 3'- gcUUGCCGCuc--CAaGCG-GCGCUCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 59469 | 0.68 | 0.487438 |
Target: 5'- uGGACGGCccgcGAGGcUCGCCGUagucgacgauGAGGg- -3' miRNA: 3'- gCUUGCCG----CUCCaAGCGGCG----------CUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 42189 | 0.68 | 0.487438 |
Target: 5'- cCGGGCaGUcaGGGUUCGCCGCGAGcuUCu -3' miRNA: 3'- -GCUUGcCGc-UCCAAGCGGCGCUCc-AG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 4615 | 0.68 | 0.487438 |
Target: 5'- aCGGGCGGUGAcGGaacUCGCUGUG-GGUUu -3' miRNA: 3'- -GCUUGCCGCU-CCa--AGCGGCGCuCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 23537 | 0.68 | 0.507336 |
Target: 5'- uGGAUGGUGaAGGUgucaUUGCUGCGcgcGGUCa -3' miRNA: 3'- gCUUGCCGC-UCCA----AGCGGCGCu--CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 40062 | 0.68 | 0.516403 |
Target: 5'- gCGGGCaGGUu-GGUcaaagcagggugaUCGCCGCGuGGUCg -3' miRNA: 3'- -GCUUG-CCGcuCCA-------------AGCGGCGCuCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 42488 | 0.68 | 0.517415 |
Target: 5'- gCGua-GGUGGGGUUggugagcaGCCGCGAGGa- -3' miRNA: 3'- -GCuugCCGCUCCAAg-------CGGCGCUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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