Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23876 | 3' | -58.3 | NC_005262.1 | + | 186 | 0.66 | 0.600371 |
Target: 5'- uCGGACGGCuucauGGUccaCGCCGgCGGGGg- -3' miRNA: 3'- -GCUUGCCGcu---CCAa--GCGGC-GCUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 1990 | 0.7 | 0.368556 |
Target: 5'- uCGAGC-GCGAGGcaugCGCCGCGcAGG-Cg -3' miRNA: 3'- -GCUUGcCGCUCCaa--GCGGCGC-UCCaG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 4615 | 0.68 | 0.487438 |
Target: 5'- aCGGGCGGUGAcGGaacUCGCUGUG-GGUUu -3' miRNA: 3'- -GCUUGCCGCU-CCa--AGCGGCGCuCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 4658 | 0.67 | 0.537802 |
Target: 5'- gCGcGCGGCGAcgcggcccggccGGUUCGCCucgGCGcGGUa -3' miRNA: 3'- -GCuUGCCGCU------------CCAAGCGG---CGCuCCAg -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 6628 | 0.8 | 0.085293 |
Target: 5'- aCGAGCGGCGAGGggUCGCCGgGGauGUCg -3' miRNA: 3'- -GCUUGCCGCUCCa-AGCGGCgCUc-CAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 8267 | 0.66 | 0.619391 |
Target: 5'- aGcAGCGGcCGAGGaagcugcccgcgUCGCuCGCGAGG-Cg -3' miRNA: 3'- gC-UUGCC-GCUCCa-----------AGCG-GCGCUCCaG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 9670 | 0.69 | 0.458306 |
Target: 5'- uCGAGCgaguaGGCGAGGg-CGCCGuCGAcGUCg -3' miRNA: 3'- -GCUUG-----CCGCUCCaaGCGGC-GCUcCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 10460 | 0.72 | 0.291621 |
Target: 5'- gCGGuCGGCGAGGUagCGgCGCGcgcGGUCg -3' miRNA: 3'- -GCUuGCCGCUCCAa-GCgGCGCu--CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 10635 | 0.66 | 0.600371 |
Target: 5'- gCGAAgGGCG-GGUugccgaUCGCCGCGucGa- -3' miRNA: 3'- -GCUUgCCGCuCCA------AGCGGCGCucCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 13397 | 0.67 | 0.558459 |
Target: 5'- --cGCGGCGcuGaUCGCCGCGcGGUUc -3' miRNA: 3'- gcuUGCCGCucCaAGCGGCGCuCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 16024 | 0.66 | 0.636327 |
Target: 5'- uCGAgcACGGgGAgcccgcgcgaugccgGGUUCGCCGCGGccGG-Cg -3' miRNA: 3'- -GCU--UGCCgCU---------------CCAAGCGGCGCU--CCaG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 16493 | 0.67 | 0.568873 |
Target: 5'- aCGAGCugGGCGAGGcgcugggCGCUGCGcuGGGg- -3' miRNA: 3'- -GCUUG--CCGCUCCaa-----GCGGCGC--UCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 16798 | 0.71 | 0.336188 |
Target: 5'- cCGGACGGCGAGcucauggaGUUCcugcacgacaGCCGCGAcuucgugaaGGUCg -3' miRNA: 3'- -GCUUGCCGCUC--------CAAG----------CGGCGCU---------CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 17206 | 0.7 | 0.402998 |
Target: 5'- gCGucuGCGGCGAGGacggCGCUGgCGucguGGUCg -3' miRNA: 3'- -GCu--UGCCGCUCCaa--GCGGC-GCu---CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 17256 | 0.67 | 0.579334 |
Target: 5'- gGAGCGGCGGccggCGCCGCGcuGGGc- -3' miRNA: 3'- gCUUGCCGCUccaaGCGGCGC--UCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 23477 | 0.71 | 0.328427 |
Target: 5'- aCGAAUggcugGGCGAGGUUCGCcCGCugacgcccGAGGa- -3' miRNA: 3'- -GCUUG-----CCGCUCCAAGCG-GCG--------CUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 23537 | 0.68 | 0.507336 |
Target: 5'- uGGAUGGUGaAGGUgucaUUGCUGCGcgcGGUCa -3' miRNA: 3'- gCUUGCCGC-UCCA----AGCGGCGCu--CCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 25686 | 0.69 | 0.420967 |
Target: 5'- -cGACGGcCGAGG---GCCGCGAGGg- -3' miRNA: 3'- gcUUGCC-GCUCCaagCGGCGCUCCag -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 29362 | 0.67 | 0.579334 |
Target: 5'- gCGAACGGCagaaccuucguGAGGaaUUCGU--CGAGGUCg -3' miRNA: 3'- -GCUUGCCG-----------CUCC--AAGCGgcGCUCCAG- -5' |
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23876 | 3' | -58.3 | NC_005262.1 | + | 31178 | 0.67 | 0.5481 |
Target: 5'- --uACGGCGuGGUgCGCUGCuGGGUa -3' miRNA: 3'- gcuUGCCGCuCCAaGCGGCGcUCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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