miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23876 3' -58.3 NC_005262.1 + 33806 0.66 0.621507
Target:  5'- gCGGGCaacguccuccaGGaCGAGGaucacaUUCGCUGgGAGGUCc -3'
miRNA:   3'- -GCUUG-----------CC-GCUCC------AAGCGGCgCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 34976 0.66 0.632092
Target:  5'- uCGAGCGcgacGCGAGcucgagaugCGCgggCGCGAGGUCa -3'
miRNA:   3'- -GCUUGC----CGCUCcaa------GCG---GCGCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 39508 0.69 0.43941
Target:  5'- aGGGCGGCGAGcGUcgcgccgaUUGCUGCGAagaaGGUUu -3'
miRNA:   3'- gCUUGCCGCUC-CA--------AGCGGCGCU----CCAG- -5'
23876 3' -58.3 NC_005262.1 + 40062 0.68 0.516403
Target:  5'- gCGGGCaGGUu-GGUcaaagcagggugaUCGCCGCGuGGUCg -3'
miRNA:   3'- -GCUUG-CCGcuCCA-------------AGCGGCGCuCCAG- -5'
23876 3' -58.3 NC_005262.1 + 41106 0.66 0.642678
Target:  5'- gCGAgGCGGuCGAGGcgCGuCUGCGcacuGGUCc -3'
miRNA:   3'- -GCU-UGCC-GCUCCaaGC-GGCGCu---CCAG- -5'
23876 3' -58.3 NC_005262.1 + 42189 0.68 0.487438
Target:  5'- cCGGGCaGUcaGGGUUCGCCGCGAGcuUCu -3'
miRNA:   3'- -GCUUGcCGc-UCCAAGCGGCGCUCc-AG- -5'
23876 3' -58.3 NC_005262.1 + 42488 0.68 0.517415
Target:  5'- gCGua-GGUGGGGUUggugagcaGCCGCGAGGa- -3'
miRNA:   3'- -GCuugCCGCUCCAAg-------CGGCGCUCCag -5'
23876 3' -58.3 NC_005262.1 + 43034 0.66 0.632092
Target:  5'- gCGAucucgUGGCGcugGGGUUCGaCCGggcaGGGGUCg -3'
miRNA:   3'- -GCUu----GCCGC---UCCAAGC-GGCg---CUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 43274 0.67 0.527572
Target:  5'- uCGAguGgGGUGAGG-UCGUCGCGAGcGcCg -3'
miRNA:   3'- -GCU--UgCCGCUCCaAGCGGCGCUC-CaG- -5'
23876 3' -58.3 NC_005262.1 + 45215 0.67 0.527572
Target:  5'- uCGAAUGGCuacacgGAGGcccugaacggCGUCGCGaAGGUCa -3'
miRNA:   3'- -GCUUGCCG------CUCCaa--------GCGGCGC-UCCAG- -5'
23876 3' -58.3 NC_005262.1 + 49230 0.68 0.477628
Target:  5'- -cGGCGGCGcgcaGUcCGCgCGCGAGGUCc -3'
miRNA:   3'- gcUUGCCGCuc--CAaGCG-GCGCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 50948 0.67 0.5481
Target:  5'- gCGAAgcuCGGCacGAcGGUUC-CCGCGAGGcCg -3'
miRNA:   3'- -GCUU---GCCG--CU-CCAAGcGGCGCUCCaG- -5'
23876 3' -58.3 NC_005262.1 + 51128 0.7 0.394198
Target:  5'- aGAACgGGCGcaGGGUUCGCCGCGc---- -3'
miRNA:   3'- gCUUG-CCGC--UCCAAGCGGCGCuccag -5'
23876 3' -58.3 NC_005262.1 + 54842 0.66 0.632092
Target:  5'- gGAugGGUGGaGUgcgUCGCCcgcGCGAGgGUCa -3'
miRNA:   3'- gCUugCCGCUcCA---AGCGG---CGCUC-CAG- -5'
23876 3' -58.3 NC_005262.1 + 57281 0.69 0.429209
Target:  5'- gCGuGACGGCGAGG-UCGgCGCGcugaucgucgagcGGGUUg -3'
miRNA:   3'- -GC-UUGCCGCUCCaAGCgGCGC-------------UCCAG- -5'
23876 3' -58.3 NC_005262.1 + 58334 1.1 0.000631
Target:  5'- uCGAACGGCGAGGUUCGCCGCGAGGUCa -3'
miRNA:   3'- -GCUUGCCGCUCCAAGCGGCGCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 59469 0.68 0.487438
Target:  5'- uGGACGGCccgcGAGGcUCGCCGUagucgacgauGAGGg- -3'
miRNA:   3'- gCUUGCCG----CUCCaAGCGGCG----------CUCCag -5'
23876 3' -58.3 NC_005262.1 + 61285 0.68 0.467916
Target:  5'- uCGAuCGGCGcGGccaGCCucGCGGGGUCg -3'
miRNA:   3'- -GCUuGCCGCuCCaagCGG--CGCUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.