miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23876 3' -58.3 NC_005262.1 + 23537 0.68 0.507336
Target:  5'- uGGAUGGUGaAGGUgucaUUGCUGCGcgcGGUCa -3'
miRNA:   3'- gCUUGCCGC-UCCA----AGCGGCGCu--CCAG- -5'
23876 3' -58.3 NC_005262.1 + 59469 0.68 0.487438
Target:  5'- uGGACGGCccgcGAGGcUCGCCGUagucgacgauGAGGg- -3'
miRNA:   3'- gCUUGCCG----CUCCaAGCGGCG----------CUCCag -5'
23876 3' -58.3 NC_005262.1 + 42189 0.68 0.487438
Target:  5'- cCGGGCaGUcaGGGUUCGCCGCGAGcuUCu -3'
miRNA:   3'- -GCUUGcCGc-UCCAAGCGGCGCUCc-AG- -5'
23876 3' -58.3 NC_005262.1 + 4615 0.68 0.487438
Target:  5'- aCGGGCGGUGAcGGaacUCGCUGUG-GGUUu -3'
miRNA:   3'- -GCUUGCCGCU-CCa--AGCGGCGCuCCAG- -5'
23876 3' -58.3 NC_005262.1 + 49230 0.68 0.477628
Target:  5'- -cGGCGGCGcgcaGUcCGCgCGCGAGGUCc -3'
miRNA:   3'- gcUUGCCGCuc--CAaGCG-GCGCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 61285 0.68 0.467916
Target:  5'- uCGAuCGGCGcGGccaGCCucGCGGGGUCg -3'
miRNA:   3'- -GCUuGCCGCuCCaagCGG--CGCUCCAG- -5'
23876 3' -58.3 NC_005262.1 + 9670 0.69 0.458306
Target:  5'- uCGAGCgaguaGGCGAGGg-CGCCGuCGAcGUCg -3'
miRNA:   3'- -GCUUG-----CCGCUCCaaGCGGC-GCUcCAG- -5'
23876 3' -58.3 NC_005262.1 + 39508 0.69 0.43941
Target:  5'- aGGGCGGCGAGcGUcgcgccgaUUGCUGCGAagaaGGUUu -3'
miRNA:   3'- gCUUGCCGCUC-CA--------AGCGGCGCU----CCAG- -5'
23876 3' -58.3 NC_005262.1 + 57281 0.69 0.429209
Target:  5'- gCGuGACGGCGAGG-UCGgCGCGcugaucgucgagcGGGUUg -3'
miRNA:   3'- -GC-UUGCCGCUCCaAGCgGCGC-------------UCCAG- -5'
23876 3' -58.3 NC_005262.1 + 25686 0.69 0.420967
Target:  5'- -cGACGGcCGAGG---GCCGCGAGGg- -3'
miRNA:   3'- gcUUGCC-GCUCCaagCGGCGCUCCag -5'
23876 3' -58.3 NC_005262.1 + 17206 0.7 0.402998
Target:  5'- gCGucuGCGGCGAGGacggCGCUGgCGucguGGUCg -3'
miRNA:   3'- -GCu--UGCCGCUCCaa--GCGGC-GCu---CCAG- -5'
23876 3' -58.3 NC_005262.1 + 51128 0.7 0.394198
Target:  5'- aGAACgGGCGcaGGGUUCGCCGCGc---- -3'
miRNA:   3'- gCUUG-CCGC--UCCAAGCGGCGCuccag -5'
23876 3' -58.3 NC_005262.1 + 1990 0.7 0.368556
Target:  5'- uCGAGC-GCGAGGcaugCGCCGCGcAGG-Cg -3'
miRNA:   3'- -GCUUGcCGCUCCaa--GCGGCGC-UCCaG- -5'
23876 3' -58.3 NC_005262.1 + 16798 0.71 0.336188
Target:  5'- cCGGACGGCGAGcucauggaGUUCcugcacgacaGCCGCGAcuucgugaaGGUCg -3'
miRNA:   3'- -GCUUGCCGCUC--------CAAG----------CGGCGCU---------CCAG- -5'
23876 3' -58.3 NC_005262.1 + 23477 0.71 0.328427
Target:  5'- aCGAAUggcugGGCGAGGUUCGCcCGCugacgcccGAGGa- -3'
miRNA:   3'- -GCUUG-----CCGCUCCAAGCG-GCG--------CUCCag -5'
23876 3' -58.3 NC_005262.1 + 10460 0.72 0.291621
Target:  5'- gCGGuCGGCGAGGUagCGgCGCGcgcGGUCg -3'
miRNA:   3'- -GCUuGCCGCUCCAa-GCgGCGCu--CCAG- -5'
23876 3' -58.3 NC_005262.1 + 6628 0.8 0.085293
Target:  5'- aCGAGCGGCGAGGggUCGCCGgGGauGUCg -3'
miRNA:   3'- -GCUUGCCGCUCCa-AGCGGCgCUc-CAG- -5'
23876 3' -58.3 NC_005262.1 + 58334 1.1 0.000631
Target:  5'- uCGAACGGCGAGGUUCGCCGCGAGGUCa -3'
miRNA:   3'- -GCUUGCCGCUCCAAGCGGCGCUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.