miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23876 5' -54 NC_005262.1 + 60708 0.7 0.646443
Target:  5'- cGGGcGCGUCGggGauggacgacgacaaGGACCgcUGGCUCgGCGa -3'
miRNA:   3'- -CCC-UGUAGCuuU--------------UCUGG--GCCGAG-CGC- -5'
23876 5' -54 NC_005262.1 + 50919 0.7 0.632332
Target:  5'- aGGGCAUCGAGcacgaaacgaagauGGugCCGGC-CGCc -3'
miRNA:   3'- cCCUGUAGCUUu-------------UCugGGCCGaGCGc -5'
23876 5' -54 NC_005262.1 + 6648 0.7 0.627989
Target:  5'- gGGGAUGUCGAcc-GACaCGGC-CGCGa -3'
miRNA:   3'- -CCCUGUAGCUuuuCUGgGCCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 21646 0.7 0.606296
Target:  5'- -cGGCcgCGAccGGGCCCGGCgcCGCGu -3'
miRNA:   3'- ccCUGuaGCUuuUCUGGGCCGa-GCGC- -5'
23876 5' -54 NC_005262.1 + 59995 0.71 0.584689
Target:  5'- cGGGcCGUCGAGGAuGGCCgGGUUC-CGa -3'
miRNA:   3'- -CCCuGUAGCUUUU-CUGGgCCGAGcGC- -5'
23876 5' -54 NC_005262.1 + 22173 0.71 0.556839
Target:  5'- uGGaGGCgaagGUCGAGAAGcuggaagccgagaacGCCgGGCUCGCGc -3'
miRNA:   3'- -CC-CUG----UAGCUUUUC---------------UGGgCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 53632 0.72 0.490207
Target:  5'- cGGGCGUCGAcauGGACgCGGCauUCGCc -3'
miRNA:   3'- cCCUGUAGCUuu-UCUGgGCCG--AGCGc -5'
23876 5' -54 NC_005262.1 + 38961 0.73 0.45049
Target:  5'- aGGGugAUCGGcacGGCgCCGGC-CGCGa -3'
miRNA:   3'- -CCCugUAGCUuuuCUG-GGCCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 7999 0.73 0.440839
Target:  5'- aGGACAUcacuccggaggCGGcAAAGGCCCuccGGCUCGCGu -3'
miRNA:   3'- cCCUGUA-----------GCU-UUUCUGGG---CCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 61 0.74 0.421894
Target:  5'- ------cCGggGAGGCCgCGGCUCGCGa -3'
miRNA:   3'- cccuguaGCuuUUCUGG-GCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 39013 0.75 0.376756
Target:  5'- -cGAUGUCGAAGugcucGCCCGGCUCGCc -3'
miRNA:   3'- ccCUGUAGCUUUuc---UGGGCCGAGCGc -5'
23876 5' -54 NC_005262.1 + 55565 0.75 0.343064
Target:  5'- aGGGCAUCGAcccGG-CCGGCUCGCa -3'
miRNA:   3'- cCCUGUAGCUuuuCUgGGCCGAGCGc -5'
23876 5' -54 NC_005262.1 + 53824 0.76 0.304083
Target:  5'- cGGGCAUCGAGcuGACgcaCCGGCgcggCGCGg -3'
miRNA:   3'- cCCUGUAGCUUuuCUG---GGCCGa---GCGC- -5'
23876 5' -54 NC_005262.1 + 58370 1.11 0.00137
Target:  5'- cGGGACAUCGAAAAGACCCGGCUCGCGu -3'
miRNA:   3'- -CCCUGUAGCUUUUCUGGGCCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.