Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23876 | 5' | -54 | NC_005262.1 | + | 6648 | 0.7 | 0.627989 |
Target: 5'- gGGGAUGUCGAcc-GACaCGGC-CGCGa -3' miRNA: 3'- -CCCUGUAGCUuuuCUGgGCCGaGCGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 21646 | 0.7 | 0.606296 |
Target: 5'- -cGGCcgCGAccGGGCCCGGCgcCGCGu -3' miRNA: 3'- ccCUGuaGCUuuUCUGGGCCGa-GCGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 59995 | 0.71 | 0.584689 |
Target: 5'- cGGGcCGUCGAGGAuGGCCgGGUUC-CGa -3' miRNA: 3'- -CCCuGUAGCUUUU-CUGGgCCGAGcGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 38961 | 0.73 | 0.45049 |
Target: 5'- aGGGugAUCGGcacGGCgCCGGC-CGCGa -3' miRNA: 3'- -CCCugUAGCUuuuCUG-GGCCGaGCGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 39013 | 0.75 | 0.376756 |
Target: 5'- -cGAUGUCGAAGugcucGCCCGGCUCGCc -3' miRNA: 3'- ccCUGUAGCUUUuc---UGGGCCGAGCGc -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 46829 | 0.67 | 0.765726 |
Target: 5'- aGGGcaAUAUCGGu---GCCCGGCUUgGCGg -3' miRNA: 3'- -CCC--UGUAGCUuuucUGGGCCGAG-CGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 21114 | 0.67 | 0.795178 |
Target: 5'- uGGGGCcacgCGugcGGGcGCCaCGGCUCGCa -3' miRNA: 3'- -CCCUGua--GCuu-UUC-UGG-GCCGAGCGc -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 5027 | 0.67 | 0.814003 |
Target: 5'- cGGAacgCGGAGGGugCCuGCUCGUa -3' miRNA: 3'- cCCUguaGCUUUUCugGGcCGAGCGc -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 10643 | 0.67 | 0.814003 |
Target: 5'- cGGGuugccgaucgccGCGUCGAAGAacucGCgCGGCaUCGCGg -3' miRNA: 3'- -CCC------------UGUAGCUUUUc---UGgGCCG-AGCGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 57480 | 0.66 | 0.832085 |
Target: 5'- cGGGCGcCGAcgAGAGGCggCCGGCgagCGCa -3' miRNA: 3'- cCCUGUaGCU--UUUCUG--GGCCGa--GCGc -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 5365 | 0.66 | 0.832085 |
Target: 5'- cGGGGCGUCcuuGAcgggcAGGGACgCGGC-CGUGu -3' miRNA: 3'- -CCCUGUAG---CU-----UUUCUGgGCCGaGCGC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 36852 | 0.66 | 0.848506 |
Target: 5'- cGGGAUGUggucgCGGAuAGGCggcgaauCCGGCUCGgGa -3' miRNA: 3'- -CCCUGUA-----GCUUuUCUG-------GGCCGAGCgC- -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 32698 | 0.66 | 0.857652 |
Target: 5'- aGGAgGUaGGAuugucGGGCCgCGGCUCGCc -3' miRNA: 3'- cCCUgUAgCUUu----UCUGG-GCCGAGCGc -5' |
|||||||
23876 | 5' | -54 | NC_005262.1 | + | 58370 | 1.11 | 0.00137 |
Target: 5'- cGGGACAUCGAAAAGACCCGGCUCGCGu -3' miRNA: 3'- -CCCUGUAGCUUUUCUGGGCCGAGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home