miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23876 5' -54 NC_005262.1 + 53824 0.76 0.304083
Target:  5'- cGGGCAUCGAGcuGACgcaCCGGCgcggCGCGg -3'
miRNA:   3'- cCCUGUAGCUUuuCUG---GGCCGa---GCGC- -5'
23876 5' -54 NC_005262.1 + 48622 0.67 0.775692
Target:  5'- -cGACGagGAGGAG-CCCGGC-CGCu -3'
miRNA:   3'- ccCUGUagCUUUUCuGGGCCGaGCGc -5'
23876 5' -54 NC_005262.1 + 48744 0.67 0.775692
Target:  5'- cGGAUGUCGGGAAGaACCUgaaGGUcggCGCGa -3'
miRNA:   3'- cCCUGUAGCUUUUC-UGGG---CCGa--GCGC- -5'
23876 5' -54 NC_005262.1 + 63776 0.67 0.795178
Target:  5'- -uGGCAUgGGAuuGcCCCGGCucUCGCGa -3'
miRNA:   3'- ccCUGUAgCUUuuCuGGGCCG--AGCGC- -5'
23876 5' -54 NC_005262.1 + 32006 0.66 0.823142
Target:  5'- -cGuCAUCGAGAAGGCCguggaaaaGGC-CGCGa -3'
miRNA:   3'- ccCuGUAGCUUUUCUGGg-------CCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 33906 0.66 0.849348
Target:  5'- cGGcGGCccgAUCGGuagcggcGGugCCGaGCUCGCGg -3'
miRNA:   3'- -CC-CUG---UAGCUuu-----UCugGGC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 19132 0.66 0.849348
Target:  5'- cGGGCAgcaugUCGAuAGGaACCCGGUUCa-- -3'
miRNA:   3'- cCCUGU-----AGCUuUUC-UGGGCCGAGcgc -5'
23876 5' -54 NC_005262.1 + 20192 0.66 0.849348
Target:  5'- aGGACGUCGG--AGACCgGuGcCUCGUc -3'
miRNA:   3'- cCCUGUAGCUuuUCUGGgC-C-GAGCGc -5'
23876 5' -54 NC_005262.1 + 5522 0.66 0.857652
Target:  5'- cGGGAuCGUCGucgcccAGAUauGGCUCGUGc -3'
miRNA:   3'- -CCCU-GUAGCuuu---UCUGggCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 28791 0.68 0.724638
Target:  5'- uGGACGUCGAccguGACCuCGcGCcCGCGc -3'
miRNA:   3'- cCCUGUAGCUuuu-CUGG-GC-CGaGCGC- -5'
23876 5' -54 NC_005262.1 + 1747 0.68 0.724638
Target:  5'- aGGGGCG-CG---GGAUUCGaGCUCGCGa -3'
miRNA:   3'- -CCCUGUaGCuuuUCUGGGC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 55565 0.75 0.343064
Target:  5'- aGGGCAUCGAcccGG-CCGGCUCGCa -3'
miRNA:   3'- cCCUGUAGCUuuuCUgGGCCGAGCGc -5'
23876 5' -54 NC_005262.1 + 61 0.74 0.421894
Target:  5'- ------cCGggGAGGCCgCGGCUCGCGa -3'
miRNA:   3'- cccuguaGCuuUUCUGG-GCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 7999 0.73 0.440839
Target:  5'- aGGACAUcacuccggaggCGGcAAAGGCCCuccGGCUCGCGu -3'
miRNA:   3'- cCCUGUA-----------GCU-UUUCUGGG---CCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 53632 0.72 0.490207
Target:  5'- cGGGCGUCGAcauGGACgCGGCauUCGCc -3'
miRNA:   3'- cCCUGUAGCUuu-UCUGgGCCG--AGCGc -5'
23876 5' -54 NC_005262.1 + 22173 0.71 0.556839
Target:  5'- uGGaGGCgaagGUCGAGAAGcuggaagccgagaacGCCgGGCUCGCGc -3'
miRNA:   3'- -CC-CUG----UAGCUUUUC---------------UGGgCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 50919 0.7 0.632332
Target:  5'- aGGGCAUCGAGcacgaaacgaagauGGugCCGGC-CGCc -3'
miRNA:   3'- cCCUGUAGCUUu-------------UCugGGCCGaGCGc -5'
23876 5' -54 NC_005262.1 + 60708 0.7 0.646443
Target:  5'- cGGGcGCGUCGggGauggacgacgacaaGGACCgcUGGCUCgGCGa -3'
miRNA:   3'- -CCC-UGUAGCuuU--------------UCUGG--GCCGAG-CGC- -5'
23876 5' -54 NC_005262.1 + 24800 0.69 0.703512
Target:  5'- -cGACAUCGcGAAGGGCaagcgCGaGCUCGCGa -3'
miRNA:   3'- ccCUGUAGC-UUUUCUGg----GC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 58370 1.11 0.00137
Target:  5'- cGGGACAUCGAAAAGACCCGGCUCGCGu -3'
miRNA:   3'- -CCCUGUAGCUUUUCUGGGCCGAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.