Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23876 | 5' | -54 | NC_005262.1 | + | 58370 | 1.11 | 0.00137 |
Target: 5'- cGGGACAUCGAAAAGACCCGGCUCGCGu -3' miRNA: 3'- -CCCUGUAGCUUUUCUGGGCCGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 53824 | 0.76 | 0.304083 |
Target: 5'- cGGGCAUCGAGcuGACgcaCCGGCgcggCGCGg -3' miRNA: 3'- cCCUGUAGCUUuuCUG---GGCCGa---GCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 55565 | 0.75 | 0.343064 |
Target: 5'- aGGGCAUCGAcccGG-CCGGCUCGCa -3' miRNA: 3'- cCCUGUAGCUuuuCUgGGCCGAGCGc -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 39013 | 0.75 | 0.376756 |
Target: 5'- -cGAUGUCGAAGugcucGCCCGGCUCGCc -3' miRNA: 3'- ccCUGUAGCUUUuc---UGGGCCGAGCGc -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 61 | 0.74 | 0.421894 |
Target: 5'- ------cCGggGAGGCCgCGGCUCGCGa -3' miRNA: 3'- cccuguaGCuuUUCUGG-GCCGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 7999 | 0.73 | 0.440839 |
Target: 5'- aGGACAUcacuccggaggCGGcAAAGGCCCuccGGCUCGCGu -3' miRNA: 3'- cCCUGUA-----------GCU-UUUCUGGG---CCGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 38961 | 0.73 | 0.45049 |
Target: 5'- aGGGugAUCGGcacGGCgCCGGC-CGCGa -3' miRNA: 3'- -CCCugUAGCUuuuCUG-GGCCGaGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 53632 | 0.72 | 0.490207 |
Target: 5'- cGGGCGUCGAcauGGACgCGGCauUCGCc -3' miRNA: 3'- cCCUGUAGCUuu-UCUGgGCCG--AGCGc -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 22173 | 0.71 | 0.556839 |
Target: 5'- uGGaGGCgaagGUCGAGAAGcuggaagccgagaacGCCgGGCUCGCGc -3' miRNA: 3'- -CC-CUG----UAGCUUUUC---------------UGGgCCGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 59995 | 0.71 | 0.584689 |
Target: 5'- cGGGcCGUCGAGGAuGGCCgGGUUC-CGa -3' miRNA: 3'- -CCCuGUAGCUUUU-CUGGgCCGAGcGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 21646 | 0.7 | 0.606296 |
Target: 5'- -cGGCcgCGAccGGGCCCGGCgcCGCGu -3' miRNA: 3'- ccCUGuaGCUuuUCUGGGCCGa-GCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 6648 | 0.7 | 0.627989 |
Target: 5'- gGGGAUGUCGAcc-GACaCGGC-CGCGa -3' miRNA: 3'- -CCCUGUAGCUuuuCUGgGCCGaGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 50919 | 0.7 | 0.632332 |
Target: 5'- aGGGCAUCGAGcacgaaacgaagauGGugCCGGC-CGCc -3' miRNA: 3'- cCCUGUAGCUUu-------------UCugGGCCGaGCGc -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 60708 | 0.7 | 0.646443 |
Target: 5'- cGGGcGCGUCGggGauggacgacgacaaGGACCgcUGGCUCgGCGa -3' miRNA: 3'- -CCC-UGUAGCuuU--------------UCUGG--GCCGAG-CGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 46904 | 0.69 | 0.671341 |
Target: 5'- cGGGCGgugCGGuguggugcGGCCCGGCgCGCGg -3' miRNA: 3'- cCCUGUa--GCUuuu-----CUGGGCCGaGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 24800 | 0.69 | 0.703512 |
Target: 5'- -cGACAUCGcGAAGGGCaagcgCGaGCUCGCGa -3' miRNA: 3'- ccCUGUAGC-UUUUCUGg----GC-CGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 28791 | 0.68 | 0.724638 |
Target: 5'- uGGACGUCGAccguGACCuCGcGCcCGCGc -3' miRNA: 3'- cCCUGUAGCUuuu-CUGG-GC-CGaGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 1747 | 0.68 | 0.724638 |
Target: 5'- aGGGGCG-CG---GGAUUCGaGCUCGCGa -3' miRNA: 3'- -CCCUGUaGCuuuUCUGGGC-CGAGCGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 46829 | 0.67 | 0.765726 |
Target: 5'- aGGGcaAUAUCGGu---GCCCGGCUUgGCGg -3' miRNA: 3'- -CCC--UGUAGCUuuucUGGGCCGAG-CGC- -5' |
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23876 | 5' | -54 | NC_005262.1 | + | 48744 | 0.67 | 0.775692 |
Target: 5'- cGGAUGUCGGGAAGaACCUgaaGGUcggCGCGa -3' miRNA: 3'- cCCUGUAGCUUUUC-UGGG---CCGa--GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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