miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23876 5' -54 NC_005262.1 + 61 0.74 0.421894
Target:  5'- ------cCGggGAGGCCgCGGCUCGCGa -3'
miRNA:   3'- cccuguaGCuuUUCUGG-GCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 1747 0.68 0.724638
Target:  5'- aGGGGCG-CG---GGAUUCGaGCUCGCGa -3'
miRNA:   3'- -CCCUGUaGCuuuUCUGGGC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 5027 0.67 0.814003
Target:  5'- cGGAacgCGGAGGGugCCuGCUCGUa -3'
miRNA:   3'- cCCUguaGCUUUUCugGGcCGAGCGc -5'
23876 5' -54 NC_005262.1 + 5365 0.66 0.832085
Target:  5'- cGGGGCGUCcuuGAcgggcAGGGACgCGGC-CGUGu -3'
miRNA:   3'- -CCCUGUAG---CU-----UUUCUGgGCCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 5522 0.66 0.857652
Target:  5'- cGGGAuCGUCGucgcccAGAUauGGCUCGUGc -3'
miRNA:   3'- -CCCU-GUAGCuuu---UCUGggCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 6648 0.7 0.627989
Target:  5'- gGGGAUGUCGAcc-GACaCGGC-CGCGa -3'
miRNA:   3'- -CCCUGUAGCUuuuCUGgGCCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 7999 0.73 0.440839
Target:  5'- aGGACAUcacuccggaggCGGcAAAGGCCCuccGGCUCGCGu -3'
miRNA:   3'- cCCUGUA-----------GCU-UUUCUGGG---CCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 10643 0.67 0.814003
Target:  5'- cGGGuugccgaucgccGCGUCGAAGAacucGCgCGGCaUCGCGg -3'
miRNA:   3'- -CCC------------UGUAGCUUUUc---UGgGCCG-AGCGC- -5'
23876 5' -54 NC_005262.1 + 19132 0.66 0.849348
Target:  5'- cGGGCAgcaugUCGAuAGGaACCCGGUUCa-- -3'
miRNA:   3'- cCCUGU-----AGCUuUUC-UGGGCCGAGcgc -5'
23876 5' -54 NC_005262.1 + 20192 0.66 0.849348
Target:  5'- aGGACGUCGG--AGACCgGuGcCUCGUc -3'
miRNA:   3'- cCCUGUAGCUuuUCUGGgC-C-GAGCGc -5'
23876 5' -54 NC_005262.1 + 21114 0.67 0.795178
Target:  5'- uGGGGCcacgCGugcGGGcGCCaCGGCUCGCa -3'
miRNA:   3'- -CCCUGua--GCuu-UUC-UGG-GCCGAGCGc -5'
23876 5' -54 NC_005262.1 + 21646 0.7 0.606296
Target:  5'- -cGGCcgCGAccGGGCCCGGCgcCGCGu -3'
miRNA:   3'- ccCUGuaGCUuuUCUGGGCCGa-GCGC- -5'
23876 5' -54 NC_005262.1 + 22173 0.71 0.556839
Target:  5'- uGGaGGCgaagGUCGAGAAGcuggaagccgagaacGCCgGGCUCGCGc -3'
miRNA:   3'- -CC-CUG----UAGCUUUUC---------------UGGgCCGAGCGC- -5'
23876 5' -54 NC_005262.1 + 24800 0.69 0.703512
Target:  5'- -cGACAUCGcGAAGGGCaagcgCGaGCUCGCGa -3'
miRNA:   3'- ccCUGUAGC-UUUUCUGg----GC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 28791 0.68 0.724638
Target:  5'- uGGACGUCGAccguGACCuCGcGCcCGCGc -3'
miRNA:   3'- cCCUGUAGCUuuu-CUGG-GC-CGaGCGC- -5'
23876 5' -54 NC_005262.1 + 32006 0.66 0.823142
Target:  5'- -cGuCAUCGAGAAGGCCguggaaaaGGC-CGCGa -3'
miRNA:   3'- ccCuGUAGCUUUUCUGGg-------CCGaGCGC- -5'
23876 5' -54 NC_005262.1 + 32698 0.66 0.857652
Target:  5'- aGGAgGUaGGAuugucGGGCCgCGGCUCGCc -3'
miRNA:   3'- cCCUgUAgCUUu----UCUGG-GCCGAGCGc -5'
23876 5' -54 NC_005262.1 + 33906 0.66 0.849348
Target:  5'- cGGcGGCccgAUCGGuagcggcGGugCCGaGCUCGCGg -3'
miRNA:   3'- -CC-CUG---UAGCUuu-----UCugGGC-CGAGCGC- -5'
23876 5' -54 NC_005262.1 + 36852 0.66 0.848506
Target:  5'- cGGGAUGUggucgCGGAuAGGCggcgaauCCGGCUCGgGa -3'
miRNA:   3'- -CCCUGUA-----GCUUuUCUG-------GGCCGAGCgC- -5'
23876 5' -54 NC_005262.1 + 38961 0.73 0.45049
Target:  5'- aGGGugAUCGGcacGGCgCCGGC-CGCGa -3'
miRNA:   3'- -CCCugUAGCUuuuCUG-GGCCGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.