Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23879 | 3' | -57.7 | NC_005262.1 | + | 60692 | 0.67 | 0.616163 |
Target: 5'- aCGCUgGgcuucuucgcgGGcgcGUCGGGGAUGGaCGACGa -3' miRNA: 3'- gGCGAgCa----------CC---UAGCUCCUGCC-GCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 57445 | 0.66 | 0.709903 |
Target: 5'- aCCGUcCGcGGAUgcCGcGG-CGGCGACGa -3' miRNA: 3'- -GGCGaGCaCCUA--GCuCCuGCCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 57274 | 0.67 | 0.637128 |
Target: 5'- uCCGCgagCGUGacggCGAGGuCGGCG-CGc -3' miRNA: 3'- -GGCGa--GCACcua-GCUCCuGCCGCuGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 57133 | 1.09 | 0.000913 |
Target: 5'- gCCGCUCGUGGAUCGAGGACGGCGACGc -3' miRNA: 3'- -GGCGAGCACCUAGCUCCUGCCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 56708 | 0.66 | 0.689313 |
Target: 5'- gCGCUCGcUGGAggacgugucCGAGGcguCGGCGuuCGa -3' miRNA: 3'- gGCGAGC-ACCUa--------GCUCCu--GCCGCu-GC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 56308 | 0.67 | 0.60988 |
Target: 5'- gCgGCUucgacaugaaggCGUGGAucgaaaagcgucuggUCGAGGGCGGCGugccccGCGa -3' miRNA: 3'- -GgCGA------------GCACCU---------------AGCUCCUGCCGC------UGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 55930 | 0.79 | 0.132244 |
Target: 5'- aCCGUcCG-GcGAUCGAGGGCGGCGGCc -3' miRNA: 3'- -GGCGaGCaC-CUAGCUCCUGCCGCUGc -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 45972 | 0.67 | 0.637128 |
Target: 5'- cCCGCUCGaGGGUUG-GGACGacaGCcGCGu -3' miRNA: 3'- -GGCGAGCaCCUAGCuCCUGC---CGcUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 45758 | 0.67 | 0.637128 |
Target: 5'- cCCGCgaacgCGacgccGAUCGgcaucgcggcgaAGGGCGGCGGCGu -3' miRNA: 3'- -GGCGa----GCac---CUAGC------------UCCUGCCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 45685 | 0.67 | 0.637128 |
Target: 5'- gCCGCacuUCGUGcGcAUCGAGGGcCGGCaGCc -3' miRNA: 3'- -GGCG---AGCAC-C-UAGCUCCU-GCCGcUGc -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 43454 | 0.75 | 0.231475 |
Target: 5'- gCGCUUGUgcGGAUCGAGucgagccgcuucguGGCGGCGACc -3' miRNA: 3'- gGCGAGCA--CCUAGCUC--------------CUGCCGCUGc -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 42233 | 0.67 | 0.647609 |
Target: 5'- cCCGCUCGcGGuuccgaugcCGAGcGccgcgcucacuGCGGCGACGa -3' miRNA: 3'- -GGCGAGCaCCua-------GCUC-C-----------UGCCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 41510 | 0.67 | 0.626643 |
Target: 5'- gCCaGCUCG-GGccacucucugCGGGGACguauGGCGACGg -3' miRNA: 3'- -GG-CGAGCaCCua--------GCUCCUG----CCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 40798 | 0.73 | 0.311906 |
Target: 5'- uCCGCUaCGgGGAUCGgcaucuacGGGGCuGCGACGg -3' miRNA: 3'- -GGCGA-GCaCCUAGC--------UCCUGcCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 39332 | 0.68 | 0.547668 |
Target: 5'- aCGCUCGUGccgugcagcgccaucGAUCGGGcguGACGGCucaGGCGu -3' miRNA: 3'- gGCGAGCAC---------------CUAGCUC---CUGCCG---CUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 36747 | 0.66 | 0.699638 |
Target: 5'- aCGCguagcgCGUGaGGUCGAuGGCGG-GGCGg -3' miRNA: 3'- gGCGa-----GCAC-CUAGCUcCUGCCgCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 35706 | 0.67 | 0.626643 |
Target: 5'- uCCGCUCc-GGcGUCGgcGGGACGGCcACGc -3' miRNA: 3'- -GGCGAGcaCC-UAGC--UCCUGCCGcUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 35194 | 0.68 | 0.584829 |
Target: 5'- aCCGCcgCGUGGccagccuacGUCcgcaaggaugcgGAGGuCGGCGGCGc -3' miRNA: 3'- -GGCGa-GCACC---------UAG------------CUCCuGCCGCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 34990 | 0.66 | 0.699638 |
Target: 5'- -aGCUCGagaugcgcgGGcgCGAGGucACGGuCGACGu -3' miRNA: 3'- ggCGAGCa--------CCuaGCUCC--UGCC-GCUGC- -5' |
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23879 | 3' | -57.7 | NC_005262.1 | + | 33562 | 0.67 | 0.626643 |
Target: 5'- gUGCUCGacGAgcUCGAGGcCGGCGAg- -3' miRNA: 3'- gGCGAGCacCU--AGCUCCuGCCGCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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