miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23880 5' -51.3 NC_005262.1 + 39937 0.71 0.72294
Target:  5'- aCCGgacggGCGGCACCG-GCAaGGGCGGCg -3'
miRNA:   3'- -GGUa----UGCUGUGGUaUGUcCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 20401 0.71 0.72294
Target:  5'- uCCAUucGCGucCGCCAUguuGCA-GAGCGGCCc -3'
miRNA:   3'- -GGUA--UGCu-GUGGUA---UGUcCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 17788 0.7 0.744279
Target:  5'- ---cGCGACGCCuugcgcGUGCAGGAacgcgaacacGCGGCUg -3'
miRNA:   3'- gguaUGCUGUGG------UAUGUCCU----------CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 46736 0.7 0.751643
Target:  5'- cCUAU-CGGCGCCGUGCGcgcgacgagcucgcGGAGCuGCUu -3'
miRNA:   3'- -GGUAuGCUGUGGUAUGU--------------CCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 47231 0.7 0.774369
Target:  5'- gCCugcuCGGCauccgcgGCCGUgaACGGGAGCGGCUu -3'
miRNA:   3'- -GGuau-GCUG-------UGGUA--UGUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 41871 0.7 0.775386
Target:  5'- -gGUGCcGCACCGUAUAaugcgauauGGuGCGGCCa -3'
miRNA:   3'- ggUAUGcUGUGGUAUGU---------CCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 51206 0.7 0.775386
Target:  5'- cUCAUccGCGACGCCucgccggcgGCAGcAGCAGCUc -3'
miRNA:   3'- -GGUA--UGCUGUGGua-------UGUCcUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 13740 0.7 0.775386
Target:  5'- uUCGUcucCGGCuuCGUcuCGGGAGCAGCCg -3'
miRNA:   3'- -GGUAu--GCUGugGUAu-GUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 14702 0.69 0.784466
Target:  5'- aCCAUGCccGGCGCCAUcguaACGGccugcucGGGCAGCg -3'
miRNA:   3'- -GGUAUG--CUGUGGUA----UGUC-------CUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 22276 0.69 0.785467
Target:  5'- gCCAUACGu--CCccGCAGaGAGUGGCCc -3'
miRNA:   3'- -GGUAUGCuguGGuaUGUC-CUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 17238 0.69 0.795385
Target:  5'- gUCGU-CGugGgCGUcGCGGGAGCGGCg -3'
miRNA:   3'- -GGUAuGCugUgGUA-UGUCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 52171 0.69 0.799303
Target:  5'- cCCGgccuCGACGCCgagggcaugaccagcGUGCAGGAGUcgaAGCg -3'
miRNA:   3'- -GGUau--GCUGUGG---------------UAUGUCCUCG---UCGg -5'
23880 5' -51.3 NC_005262.1 + 55772 0.69 0.805128
Target:  5'- aCCAguacgGCGACAUCGuUGCGGGcuucgAGCAgaacGCCg -3'
miRNA:   3'- -GGUa----UGCUGUGGU-AUGUCC-----UCGU----CGG- -5'
23880 5' -51.3 NC_005262.1 + 13800 0.69 0.805128
Target:  5'- gCCGgcGCGGCuuCAUcgGCGGGAGCGGgCg -3'
miRNA:   3'- -GGUa-UGCUGugGUA--UGUCCUCGUCgG- -5'
23880 5' -51.3 NC_005262.1 + 15745 0.69 0.805128
Target:  5'- -gGUGCGACcgACgCGcuUGCGGGcGCGGCCg -3'
miRNA:   3'- ggUAUGCUG--UG-GU--AUGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 63498 0.69 0.814685
Target:  5'- gCGUGCccGACGCCugucGCaAGGAGCcggAGCCg -3'
miRNA:   3'- gGUAUG--CUGUGGua--UG-UCCUCG---UCGG- -5'
23880 5' -51.3 NC_005262.1 + 6067 0.69 0.824046
Target:  5'- gCCuugACGAUACuCAUGCGGcGcgcgucguGGCGGCCu -3'
miRNA:   3'- -GGua-UGCUGUG-GUAUGUC-C--------UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 47011 0.69 0.824046
Target:  5'- gCAgauggGCGACAUCGa--GGGcGCAGCCg -3'
miRNA:   3'- gGUa----UGCUGUGGUaugUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 59705 0.69 0.824046
Target:  5'- aUAUACauuCGuuGUGuCAGGGGCAGCCu -3'
miRNA:   3'- gGUAUGcu-GUggUAU-GUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 45780 0.69 0.824046
Target:  5'- aCCAUuuCGACAgucUCGU-CGGGcccGGCAGCCa -3'
miRNA:   3'- -GGUAu-GCUGU---GGUAuGUCC---UCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.