miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23880 5' -51.3 NC_005262.1 + 63084 0.68 0.875541
Target:  5'- gUAUGCGGCGgCGUGCAaGGcGCuGCUg -3'
miRNA:   3'- gGUAUGCUGUgGUAUGU-CCuCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 13166 0.68 0.875541
Target:  5'- cUCGgcgGCGACAuuuCCAgcaACAGGuuCAGCCg -3'
miRNA:   3'- -GGUa--UGCUGU---GGUa--UGUCCucGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 51056 0.68 0.875541
Target:  5'- aUCAUcgACgGGCACCAU-CAGGuGCucGCCg -3'
miRNA:   3'- -GGUA--UG-CUGUGGUAuGUCCuCGu-CGG- -5'
23880 5' -51.3 NC_005262.1 + 8129 0.68 0.867559
Target:  5'- cCCAUcguguuCGugACCggcGUGCcGGAcGCGGCCa -3'
miRNA:   3'- -GGUAu-----GCugUGG---UAUGuCCU-CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 60626 0.68 0.867559
Target:  5'- gCCAUGCGcACGCUGgcgaGCGGcGAGCA-CCg -3'
miRNA:   3'- -GGUAUGC-UGUGGUa---UGUC-CUCGUcGG- -5'
23880 5' -51.3 NC_005262.1 + 13982 0.68 0.859325
Target:  5'- uCCAUcgcGCGGCcgaucgggccggACgGUGCAGGGGCGuCCg -3'
miRNA:   3'- -GGUA---UGCUG------------UGgUAUGUCCUCGUcGG- -5'
23880 5' -51.3 NC_005262.1 + 10833 0.68 0.859325
Target:  5'- gCAUGCGcgucCGCCGcGCucaGGGGGCGGCa -3'
miRNA:   3'- gGUAUGCu---GUGGUaUG---UCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 29415 0.68 0.859325
Target:  5'- ---cGCGACGCUcg--AGGAGCAGCa -3'
miRNA:   3'- gguaUGCUGUGGuaugUCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 63782 0.68 0.850849
Target:  5'- gCCAU-CGACGCCGcccgcGCAGGAGgGGa- -3'
miRNA:   3'- -GGUAuGCUGUGGUa----UGUCCUCgUCgg -5'
23880 5' -51.3 NC_005262.1 + 23007 0.68 0.842138
Target:  5'- gCCGUGCGGCAUgaAUGCGgcuuccgcguGGAguucaucgacGCAGCCg -3'
miRNA:   3'- -GGUAUGCUGUGg-UAUGU----------CCU----------CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 42145 0.69 0.8332
Target:  5'- uCUAcGCGGCGCCGggccCGGucGCGGCCg -3'
miRNA:   3'- -GGUaUGCUGUGGUau--GUCcuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 52457 0.69 0.829564
Target:  5'- ----gUGACGCaggggaacccgcaGUACgAGGAGCAGCCg -3'
miRNA:   3'- gguauGCUGUGg------------UAUG-UCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 6067 0.69 0.824046
Target:  5'- gCCuugACGAUACuCAUGCGGcGcgcgucguGGCGGCCu -3'
miRNA:   3'- -GGua-UGCUGUG-GUAUGUC-C--------UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 45780 0.69 0.824046
Target:  5'- aCCAUuuCGACAgucUCGU-CGGGcccGGCAGCCa -3'
miRNA:   3'- -GGUAu-GCUGU---GGUAuGUCC---UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 59705 0.69 0.824046
Target:  5'- aUAUACauuCGuuGUGuCAGGGGCAGCCu -3'
miRNA:   3'- gGUAUGcu-GUggUAU-GUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 47011 0.69 0.824046
Target:  5'- gCAgauggGCGACAUCGa--GGGcGCAGCCg -3'
miRNA:   3'- gGUa----UGCUGUGGUaugUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 63498 0.69 0.814685
Target:  5'- gCGUGCccGACGCCugucGCaAGGAGCcggAGCCg -3'
miRNA:   3'- gGUAUG--CUGUGGua--UG-UCCUCG---UCGG- -5'
23880 5' -51.3 NC_005262.1 + 15745 0.69 0.805128
Target:  5'- -gGUGCGACcgACgCGcuUGCGGGcGCGGCCg -3'
miRNA:   3'- ggUAUGCUG--UG-GU--AUGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 13800 0.69 0.805128
Target:  5'- gCCGgcGCGGCuuCAUcgGCGGGAGCGGgCg -3'
miRNA:   3'- -GGUa-UGCUGugGUA--UGUCCUCGUCgG- -5'
23880 5' -51.3 NC_005262.1 + 55772 0.69 0.805128
Target:  5'- aCCAguacgGCGACAUCGuUGCGGGcuucgAGCAgaacGCCg -3'
miRNA:   3'- -GGUa----UGCUGUGGU-AUGUCC-----UCGU----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.