miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23885 5' -55.6 NC_005262.1 + 42852 0.66 0.75721
Target:  5'- -cCGUGCAUCaacgcGCGcGGGCUCGuCGAc -3'
miRNA:   3'- caGCAUGUAGcu---CGC-CCUGAGC-GCUa -5'
23885 5' -55.6 NC_005262.1 + 35675 0.66 0.756192
Target:  5'- cUCGUgcucACGUCGAGCGGGcacggaagcauccGCUC-CGGc -3'
miRNA:   3'- cAGCA----UGUAGCUCGCCC-------------UGAGcGCUa -5'
23885 5' -55.6 NC_005262.1 + 58637 0.66 0.74697
Target:  5'- cUCGgcaGUCGAGCGgccGGGCgCGCGAg -3'
miRNA:   3'- cAGCaugUAGCUCGC---CCUGaGCGCUa -5'
23885 5' -55.6 NC_005262.1 + 17173 0.66 0.74697
Target:  5'- -gCGUgcccuucaucGCGUCGGGCGGGAUcUGUGGc -3'
miRNA:   3'- caGCA----------UGUAGCUCGCCCUGaGCGCUa -5'
23885 5' -55.6 NC_005262.1 + 5897 0.66 0.736616
Target:  5'- cGUCG-AUGUCGGGCGGGAg-CGCc-- -3'
miRNA:   3'- -CAGCaUGUAGCUCGCCCUgaGCGcua -5'
23885 5' -55.6 NC_005262.1 + 38323 0.67 0.694281
Target:  5'- uUCGUGCAguuggCGAGCGGcaucgcCUCGCGc- -3'
miRNA:   3'- cAGCAUGUa----GCUCGCCcu----GAGCGCua -5'
23885 5' -55.6 NC_005262.1 + 57293 0.67 0.683523
Target:  5'- gGUCGgcgcgcugauCGUCGAGCGGG--UUGCGAa -3'
miRNA:   3'- -CAGCau--------GUAGCUCGCCCugAGCGCUa -5'
23885 5' -55.6 NC_005262.1 + 31887 0.67 0.683523
Target:  5'- -aCGUccggcGCGUCGAGCGGGuuGCcCGCGu- -3'
miRNA:   3'- caGCA-----UGUAGCUCGCCC--UGaGCGCua -5'
23885 5' -55.6 NC_005262.1 + 46766 0.68 0.585755
Target:  5'- gGUCGUACA---GGCGGcGACgCGCGGUa -3'
miRNA:   3'- -CAGCAUGUagcUCGCC-CUGaGCGCUA- -5'
23885 5' -55.6 NC_005262.1 + 10882 0.69 0.521841
Target:  5'- cGUCGUAgAUCGAGCGGaucacgccCUCGCuGGUg -3'
miRNA:   3'- -CAGCAUgUAGCUCGCCcu------GAGCG-CUA- -5'
23885 5' -55.6 NC_005262.1 + 33990 0.71 0.46081
Target:  5'- cGUCGUGCGUaacaUGGGCGcGGACggCGUGAc -3'
miRNA:   3'- -CAGCAUGUA----GCUCGC-CCUGa-GCGCUa -5'
23885 5' -55.6 NC_005262.1 + 1899 0.72 0.385766
Target:  5'- -cCGUGCcuUCGAGCGGGGCggagggUGCGGg -3'
miRNA:   3'- caGCAUGu-AGCUCGCCCUGa-----GCGCUa -5'
23885 5' -55.6 NC_005262.1 + 55003 1.05 0.00222
Target:  5'- uGUCGUACAUCGAGCGGGACUCGCGAUc -3'
miRNA:   3'- -CAGCAUGUAGCUCGCCCUGAGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.