miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 3' -55 NC_005262.1 + 19612 0.65 0.79361
Target:  5'- --cGGUGCGaGuggcGGUCGGCGuCCAgcCCGg -3'
miRNA:   3'- ucaCCACGC-C----UUAGCCGU-GGUauGGC- -5'
23888 3' -55 NC_005262.1 + 21163 0.66 0.773974
Target:  5'- -----cGCGGAAggCGGcCAUCAUGCCGu -3'
miRNA:   3'- ucaccaCGCCUUa-GCC-GUGGUAUGGC- -5'
23888 3' -55 NC_005262.1 + 46887 0.66 0.763934
Target:  5'- uGUGGUGCGGug-CGGUgcggGCgGUGCg- -3'
miRNA:   3'- uCACCACGCCuuaGCCG----UGgUAUGgc -5'
23888 3' -55 NC_005262.1 + 22907 0.66 0.76191
Target:  5'- cGGUGGU-CGGuucucgugugCGGUGCCGcUGCCGg -3'
miRNA:   3'- -UCACCAcGCCuua-------GCCGUGGU-AUGGC- -5'
23888 3' -55 NC_005262.1 + 27734 0.66 0.753762
Target:  5'- gGGUaGUGCGGcaGGUUGGCA--GUACCGg -3'
miRNA:   3'- -UCAcCACGCC--UUAGCCGUggUAUGGC- -5'
23888 3' -55 NC_005262.1 + 46729 0.66 0.753762
Target:  5'- --gGGcGCGccuAUCGGCGCCGUGCgCGc -3'
miRNA:   3'- ucaCCaCGCcu-UAGCCGUGGUAUG-GC- -5'
23888 3' -55 NC_005262.1 + 45441 0.67 0.722558
Target:  5'- -aUGG-GCGGGcUCGGaACCAUcGCCGg -3'
miRNA:   3'- ucACCaCGCCUuAGCCgUGGUA-UGGC- -5'
23888 3' -55 NC_005262.1 + 12432 0.67 0.722558
Target:  5'- --cGGcgucGCGGA--CGGCGCgGUGCCGa -3'
miRNA:   3'- ucaCCa---CGCCUuaGCCGUGgUAUGGC- -5'
23888 3' -55 NC_005262.1 + 27957 0.67 0.711965
Target:  5'- -cUGG-GCGGucgCGGCGCCGacGCCGc -3'
miRNA:   3'- ucACCaCGCCuuaGCCGUGGUa-UGGC- -5'
23888 3' -55 NC_005262.1 + 25629 0.67 0.701294
Target:  5'- aAGUGGUGaCGGGcuccAUCccgGCCGUGCCGa -3'
miRNA:   3'- -UCACCAC-GCCU----UAGccgUGGUAUGGC- -5'
23888 3' -55 NC_005262.1 + 40846 0.68 0.668931
Target:  5'- cAG-GGUGCGGGGaCgGGCAUCAgcacgcaaaaUGCCGg -3'
miRNA:   3'- -UCaCCACGCCUUaG-CCGUGGU----------AUGGC- -5'
23888 3' -55 NC_005262.1 + 28509 0.68 0.658061
Target:  5'- uGUGG-GCGGGccCGaGC-CCGUACCGc -3'
miRNA:   3'- uCACCaCGCCUuaGC-CGuGGUAUGGC- -5'
23888 3' -55 NC_005262.1 + 17243 0.69 0.603554
Target:  5'- cGUGGgcgucGCGGGAgcggcggcCGGCGCCGcGCUGg -3'
miRNA:   3'- uCACCa----CGCCUUa-------GCCGUGGUaUGGC- -5'
23888 3' -55 NC_005262.1 + 24833 0.69 0.592689
Target:  5'- -----cGCGGc--CGGCGCCGUGCCGa -3'
miRNA:   3'- ucaccaCGCCuuaGCCGUGGUAUGGC- -5'
23888 3' -55 NC_005262.1 + 33826 0.7 0.507596
Target:  5'- cGUGGUGCcaGAuUUGGCACCuucGCCGc -3'
miRNA:   3'- uCACCACGc-CUuAGCCGUGGua-UGGC- -5'
23888 3' -55 NC_005262.1 + 38752 0.71 0.497295
Target:  5'- cGUGGUGUGcGAUCGugucgugucGCACUGUACCGc -3'
miRNA:   3'- uCACCACGCcUUAGC---------CGUGGUAUGGC- -5'
23888 3' -55 NC_005262.1 + 22366 0.71 0.466982
Target:  5'- cGUGGUGCGGAGggugucCGGCGCgG-AUCGc -3'
miRNA:   3'- uCACCACGCCUUa-----GCCGUGgUaUGGC- -5'
23888 3' -55 NC_005262.1 + 14065 0.71 0.45709
Target:  5'- cGUcGGUGCGGcuUCGGCcGCCGguucGCCGc -3'
miRNA:   3'- uCA-CCACGCCuuAGCCG-UGGUa---UGGC- -5'
23888 3' -55 NC_005262.1 + 38543 0.72 0.437651
Target:  5'- --cGGUcGCGGugacGAUCGGCACCGccgcggGCCGg -3'
miRNA:   3'- ucaCCA-CGCC----UUAGCCGUGGUa-----UGGC- -5'
23888 3' -55 NC_005262.1 + 35834 0.73 0.391218
Target:  5'- --cGGaGCGGcGUCGGCGCCGcgACCGc -3'
miRNA:   3'- ucaCCaCGCCuUAGCCGUGGUa-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.