Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2389 | 5' | -50.5 | NC_001416.1 | + | 11835 | 0.68 | 0.759333 |
Target: 5'- cCUGACGGGCGguAUAuuucuCCAGCGg -3' miRNA: 3'- -GAUUGUCCGCguUGUcauu-GGUCGUa -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 9503 | 0.74 | 0.451813 |
Target: 5'- gCUGGCAGGCGUcACGGUcauGCCGGUu- -3' miRNA: 3'- -GAUUGUCCGCGuUGUCAu--UGGUCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 13987 | 0.74 | 0.420851 |
Target: 5'- ---cCAGGUGCAGguGuUGGCCAGCAUg -3' miRNA: 3'- gauuGUCCGCGUUguC-AUUGGUCGUA- -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 4697 | 0.66 | 0.883614 |
Target: 5'- --cGCGGGCGCuGCAGccguacucggggaUGACCGGUu- -3' miRNA: 3'- gauUGUCCGCGuUGUC-------------AUUGGUCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 1160 | 0.66 | 0.862719 |
Target: 5'- aCUAAUGGGCGUggcuucuggugccugGGCGGUAAagCGGCAa -3' miRNA: 3'- -GAUUGUCCGCG---------------UUGUCAUUg-GUCGUa -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 12070 | 0.67 | 0.831585 |
Target: 5'- -aGGC-GGCGCAAC-GUcGCCAGCu- -3' miRNA: 3'- gaUUGuCCGCGUUGuCAuUGGUCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 45629 | 0.68 | 0.791459 |
Target: 5'- -cAACAGGCGCcgGACGcu-ACCAGCu- -3' miRNA: 3'- gaUUGUCCGCG--UUGUcauUGGUCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 18856 | 0.7 | 0.679829 |
Target: 5'- -aAACAGGCGCu--GGgcAUCAGCGUg -3' miRNA: 3'- gaUUGUCCGCGuugUCauUGGUCGUA- -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 13706 | 0.7 | 0.668155 |
Target: 5'- uCUggUcGGCGgAACGGUGGuCCGGCGUa -3' miRNA: 3'- -GAuuGuCCGCgUUGUCAUU-GGUCGUA- -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 5617 | 0.7 | 0.644704 |
Target: 5'- --cACAGGCGC-GCAGUGACaCuGCGc -3' miRNA: 3'- gauUGUCCGCGuUGUCAUUG-GuCGUa -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 5776 | 0.73 | 0.494946 |
Target: 5'- --cGCAGG-GCAACAGUGACCcGGCu- -3' miRNA: 3'- gauUGUCCgCGUUGUCAUUGG-UCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 9213 | 0.75 | 0.400936 |
Target: 5'- -gAGCAGGgGCAGCAGgcgcuGCUGGCGUg -3' miRNA: 3'- gaUUGUCCgCGUUGUCau---UGGUCGUA- -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 39473 | 0.76 | 0.344924 |
Target: 5'- -aGGCAGGCGUGACA---GCCAGCAa -3' miRNA: 3'- gaUUGUCCGCGUUGUcauUGGUCGUa -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 13564 | 0.78 | 0.264584 |
Target: 5'- cCUGGCAGGgGCGACAGU-AUCAGCc- -3' miRNA: 3'- -GAUUGUCCgCGUUGUCAuUGGUCGua -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 40311 | 1.07 | 0.002801 |
Target: 5'- gCUAACAGGCGCAACAGUAACCAGCAUa -3' miRNA: 3'- -GAUUGUCCGCGUUGUCAUUGGUCGUA- -5' |
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2389 | 5' | -50.5 | NC_001416.1 | + | 12207 | 0.66 | 0.884412 |
Target: 5'- -cAGCAGGCGgauaaauucgcaCAGCAGcAACgGGCAa -3' miRNA: 3'- gaUUGUCCGC------------GUUGUCaUUGgUCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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