Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 46706 | 0.68 | 0.871042 |
Target: 5'- uGGUGUuauUCCCGAuGCuuuuugaAGUUCGCAGa -3' miRNA: 3'- -UUACGuu-AGGGCUuUG-------UCAAGCGUCc -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 44793 | 0.73 | 0.60391 |
Target: 5'- uGUGCAgauauaaaaaAUCCCGAAACcGUUaUGCAGGc -3' miRNA: 3'- uUACGU----------UAGGGCUUUGuCAA-GCGUCC- -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 44671 | 1.09 | 0.003843 |
Target: 5'- aAAUGCAAUCCCGAAACAGUUCGCAGGu -3' miRNA: 3'- -UUACGUUAGGGCUUUGUCAAGCGUCC- -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 35476 | 0.69 | 0.836151 |
Target: 5'- aAGUGCGAUUCCGGAuuaGCugccaauGUgccaaUCGCGGGg -3' miRNA: 3'- -UUACGUUAGGGCUU---UGu------CA-----AGCGUCC- -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 22139 | 0.68 | 0.880132 |
Target: 5'- cGGUGCAAUaUCGguACuGUUUGCAGGc -3' miRNA: 3'- -UUACGUUAgGGCuuUGuCAAGCGUCC- -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 16145 | 0.73 | 0.650783 |
Target: 5'- cGUGCAGguggaCUCGGAGCAGUUCgGCAGc -3' miRNA: 3'- uUACGUUa----GGGCUUUGUCAAG-CGUCc -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 14549 | 0.66 | 0.945948 |
Target: 5'- --aGC-AUCCCGGAACAGUgUGUAa- -3' miRNA: 3'- uuaCGuUAGGGCUUUGUCAaGCGUcc -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 10485 | 0.67 | 0.92335 |
Target: 5'- --cGUAAUgCUGAuGACAGUaucagaagggaUCGCAGGa -3' miRNA: 3'- uuaCGUUAgGGCU-UUGUCA-----------AGCGUCC- -5' |
|||||||
2391 | 3' | -48.8 | NC_001416.1 | + | 5115 | 0.66 | 0.950823 |
Target: 5'- -cUGCAGUCCCGGAugGa--CGCAa- -3' miRNA: 3'- uuACGUUAGGGCUUugUcaaGCGUcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home