miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 3' -54 NC_005262.1 + 28918 0.7 0.607015
Target:  5'- cGCGauccaGGCACG----GCAGGAaCAGGCAg -3'
miRNA:   3'- -CGUg----CCGUGCaacuUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 29455 0.67 0.77885
Target:  5'- uCACGGCGuCGaUGAacgccugauaguGCAGGGC-GGCGa -3'
miRNA:   3'- cGUGCCGU-GCaACU------------UGUCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 30950 0.66 0.824911
Target:  5'- -gACGGCGCGcuacuucccGCAGG-CGGGCGa -3'
miRNA:   3'- cgUGCCGUGCaacu-----UGUCCuGUCCGU- -5'
23912 3' -54 NC_005262.1 + 32565 0.66 0.817529
Target:  5'- cUugGGCGCGUcGAuc--GACAGGCGc -3'
miRNA:   3'- cGugCCGUGCAaCUugucCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 34127 0.69 0.662108
Target:  5'- gGUugGGCGgGcUGcGCGGGcGCGGGCGg -3'
miRNA:   3'- -CGugCCGUgCaACuUGUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 36740 0.71 0.520404
Target:  5'- cGCACGaacgcguaGCGCGUgaggucGAugGCGGGGCGGGCu -3'
miRNA:   3'- -CGUGC--------CGUGCAa-----CU--UGUCCUGUCCGu -5'
23912 3' -54 NC_005262.1 + 37710 1.11 0.001098
Target:  5'- aGCACGGCACGUUGAACAGGACAGGCAg -3'
miRNA:   3'- -CGUGCCGUGCAACUUGUCCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 38441 0.67 0.768771
Target:  5'- cGCAcCGGCuguugGCGUUGAACAGcGCGuGGUc -3'
miRNA:   3'- -CGU-GCCG-----UGCAACUUGUCcUGU-CCGu -5'
23912 3' -54 NC_005262.1 + 40484 0.75 0.316105
Target:  5'- uGCGCGGCgccuugauGCGcUUGAuggcgaacgACGGGGCGGGCGu -3'
miRNA:   3'- -CGUGCCG--------UGC-AACU---------UGUCCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 40666 0.7 0.585062
Target:  5'- aGCGCGGUGCGgcGAACGGGugGaaCAg -3'
miRNA:   3'- -CGUGCCGUGCaaCUUGUCCugUccGU- -5'
23912 3' -54 NC_005262.1 + 43848 0.68 0.694907
Target:  5'- cGCGCGGCgguGCGcc-GGCAGGACcucGGCGc -3'
miRNA:   3'- -CGUGCCG---UGCaacUUGUCCUGu--CCGU- -5'
23912 3' -54 NC_005262.1 + 44154 0.66 0.826736
Target:  5'- aCGCGcGCGCGaucGGGCAGGAgCGcGGCGg -3'
miRNA:   3'- cGUGC-CGUGCaa-CUUGUCCU-GU-CCGU- -5'
23912 3' -54 NC_005262.1 + 46996 0.66 0.826736
Target:  5'- gGCAUGGCGCGcgacGCAG-AUGGGCGa -3'
miRNA:   3'- -CGUGCCGUGCaacuUGUCcUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 47244 0.67 0.727158
Target:  5'- cCGCGGC-CG-UGAACGGGAgcGGCu -3'
miRNA:   3'- cGUGCCGuGCaACUUGUCCUguCCGu -5'
23912 3' -54 NC_005262.1 + 48466 0.66 0.788776
Target:  5'- cGCGCGGaucgcgagcCGCG-UGGGCAcGGGCGGcGCGa -3'
miRNA:   3'- -CGUGCC---------GUGCaACUUGU-CCUGUC-CGU- -5'
23912 3' -54 NC_005262.1 + 49145 0.66 0.817529
Target:  5'- aGguCGGCACGgUGGGCGu-GCAGGCc -3'
miRNA:   3'- -CguGCCGUGCaACUUGUccUGUCCGu -5'
23912 3' -54 NC_005262.1 + 50887 0.67 0.735626
Target:  5'- cGCACGGCGCGccgucaaucaccUGAacgcGCAGGGCAucGaGCAc -3'
miRNA:   3'- -CGUGCCGUGCa-----------ACU----UGUCCUGU--C-CGU- -5'
23912 3' -54 NC_005262.1 + 51766 0.67 0.726095
Target:  5'- uGCGCaGCACGggaUGAccgaugcGCAGGucCAGGCu -3'
miRNA:   3'- -CGUGcCGUGCa--ACU-------UGUCCu-GUCCGu -5'
23912 3' -54 NC_005262.1 + 53452 0.66 0.808127
Target:  5'- aGCGCGGCGcCGgcGucgAGGACAacGGCGu -3'
miRNA:   3'- -CGUGCCGU-GCaaCuugUCCUGU--CCGU- -5'
23912 3' -54 NC_005262.1 + 58685 0.67 0.768771
Target:  5'- cGCAUGGCAgGcaucgUGAACcGGGCGcGCAc -3'
miRNA:   3'- -CGUGCCGUgCa----ACUUGuCCUGUcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.