miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 3' -54 NC_005262.1 + 3306 0.66 0.815664
Target:  5'- cGCGCGGCccgGCGUcucgcccUGAucgcGCAGcgucauguagagcGACAGGCGc -3'
miRNA:   3'- -CGUGCCG---UGCA-------ACU----UGUC-------------CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 9607 0.73 0.401172
Target:  5'- cGCugGaGCACGcgcucGGACAGGACcGGCGc -3'
miRNA:   3'- -CGugC-CGUGCaa---CUUGUCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 12932 0.71 0.49945
Target:  5'- uGCGCGGCGCGcUGA--AGGGCGugcgcgacGGCAu -3'
miRNA:   3'- -CGUGCCGUGCaACUugUCCUGU--------CCGU- -5'
23912 3' -54 NC_005262.1 + 13509 0.66 0.817529
Target:  5'- cGCGCGGC-CGUc--ACGGGcucggccggcGCGGGCGc -3'
miRNA:   3'- -CGUGCCGuGCAacuUGUCC----------UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 13797 0.7 0.596023
Target:  5'- gGCGcCGGCGCGgcuucaucGGCGGGAgCGGGCGc -3'
miRNA:   3'- -CGU-GCCGUGCaac-----UUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 13987 0.69 0.618028
Target:  5'- cGCGCGGC-CGaucGGGCcGGACGGuGCAg -3'
miRNA:   3'- -CGUGCCGuGCaa-CUUGuCCUGUC-CGU- -5'
23912 3' -54 NC_005262.1 + 14024 0.72 0.489113
Target:  5'- gGCGCGGCAgCGgccgGAGCcucGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCGU-GCaa--CUUG---UCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 15162 0.66 0.808127
Target:  5'- gGCGCGG-AUGUUGGACGGcacGCAGcGCu -3'
miRNA:   3'- -CGUGCCgUGCAACUUGUCc--UGUC-CGu -5'
23912 3' -54 NC_005262.1 + 15624 0.66 0.826736
Target:  5'- cGCAUcgaGGCGCGgcUGAACGcGuCGGGCAu -3'
miRNA:   3'- -CGUG---CCGUGCa-ACUUGUcCuGUCCGU- -5'
23912 3' -54 NC_005262.1 + 17109 0.69 0.662108
Target:  5'- cGCGCGGCGC--UGAcuGCAucGGCGGGCGu -3'
miRNA:   3'- -CGUGCCGUGcaACU--UGUc-CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 17819 0.67 0.77885
Target:  5'- aCGCGGCuguCGUcccaacccucGAGCGGGAaCAGGUAc -3'
miRNA:   3'- cGUGCCGu--GCAa---------CUUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 19102 0.71 0.520404
Target:  5'- cGCGCGGCgaugccACGUUcGGAuCGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCG------UGCAA-CUU-GUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 20593 0.68 0.673083
Target:  5'- cGCGCGGCGCGcc--GCAGGGCuguuGCGu -3'
miRNA:   3'- -CGUGCCGUGCaacuUGUCCUGuc--CGU- -5'
23912 3' -54 NC_005262.1 + 20962 0.72 0.4449
Target:  5'- uGCACGGCAgGUUGAGCucgagcuuuuccuGaGACAuGGCGu -3'
miRNA:   3'- -CGUGCCGUgCAACUUGu------------C-CUGU-CCGU- -5'
23912 3' -54 NC_005262.1 + 21822 0.67 0.748201
Target:  5'- uGCGCGGCG-GUgu--CAGGcaACAGGCGc -3'
miRNA:   3'- -CGUGCCGUgCAacuuGUCC--UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 24223 0.68 0.716488
Target:  5'- uGCGcCGGCACGccgauuggUUGAGuaagauCGGGAgGGGCGa -3'
miRNA:   3'- -CGU-GCCGUGC--------AACUU------GUCCUgUCCGU- -5'
23912 3' -54 NC_005262.1 + 24952 0.74 0.381248
Target:  5'- cGCGCGGCGCGcccagcuuCAGGAaCAGGCc -3'
miRNA:   3'- -CGUGCCGUGCaacuu---GUCCU-GUCCGu -5'
23912 3' -54 NC_005262.1 + 26519 0.67 0.77885
Target:  5'- cGC-CGcGCACGUUGAACGuGGCucGGCc -3'
miRNA:   3'- -CGuGC-CGUGCAACUUGUcCUGu-CCGu -5'
23912 3' -54 NC_005262.1 + 26874 0.66 0.788776
Target:  5'- cGCACGGuCACGaucGAguGGGCcGGCGc -3'
miRNA:   3'- -CGUGCC-GUGCaacUUguCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 27738 0.68 0.716488
Target:  5'- aGUGCGGCAgGUUG-GCAGuacCGGGCGu -3'
miRNA:   3'- -CGUGCCGUgCAACuUGUCcu-GUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.