Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23912 | 3' | -54 | NC_005262.1 | + | 24952 | 0.74 | 0.381248 |
Target: 5'- cGCGCGGCGCGcccagcuuCAGGAaCAGGCc -3' miRNA: 3'- -CGUGCCGUGCaacuu---GUCCU-GUCCGu -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 15162 | 0.66 | 0.808127 |
Target: 5'- gGCGCGG-AUGUUGGACGGcacGCAGcGCu -3' miRNA: 3'- -CGUGCCgUGCAACUUGUCc--UGUC-CGu -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 60573 | 0.66 | 0.813791 |
Target: 5'- cGCuCGGCGCGgucuaccuguuccUGAacccggcgauACAGGGCAcGGCGa -3' miRNA: 3'- -CGuGCCGUGCa------------ACU----------UGUCCUGU-CCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 49145 | 0.66 | 0.817529 |
Target: 5'- aGguCGGCACGgUGGGCGu-GCAGGCc -3' miRNA: 3'- -CguGCCGUGCaACUUGUccUGUCCGu -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 61143 | 0.66 | 0.817529 |
Target: 5'- cGCGCuGGCGCagcaGAucGCGGcGGCGGGCGa -3' miRNA: 3'- -CGUG-CCGUGcaa-CU--UGUC-CUGUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 30950 | 0.66 | 0.824911 |
Target: 5'- -gACGGCGCGcuacuucccGCAGG-CGGGCGa -3' miRNA: 3'- cgUGCCGUGCaacu-----UGUCCuGUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 15624 | 0.66 | 0.826736 |
Target: 5'- cGCAUcgaGGCGCGgcUGAACGcGuCGGGCAu -3' miRNA: 3'- -CGUG---CCGUGCa-ACUUGUcCuGUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 44154 | 0.66 | 0.826736 |
Target: 5'- aCGCGcGCGCGaucGGGCAGGAgCGcGGCGg -3' miRNA: 3'- cGUGC-CGUGCaa-CUUGUCCU-GU-CCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 46996 | 0.66 | 0.826736 |
Target: 5'- gGCAUGGCGCGcgacGCAG-AUGGGCGa -3' miRNA: 3'- -CGUGCCGUGCaacuUGUCcUGUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 53452 | 0.66 | 0.808127 |
Target: 5'- aGCGCGGCGcCGgcGucgAGGACAacGGCGu -3' miRNA: 3'- -CGUGCCGU-GCaaCuugUCCUGU--CCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 48466 | 0.66 | 0.788776 |
Target: 5'- cGCGCGGaucgcgagcCGCG-UGGGCAcGGGCGGcGCGa -3' miRNA: 3'- -CGUGCC---------GUGCaACUUGU-CCUGUC-CGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 26874 | 0.66 | 0.788776 |
Target: 5'- cGCACGGuCACGaucGAguGGGCcGGCGc -3' miRNA: 3'- -CGUGCC-GUGCaacUUguCCUGuCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 12932 | 0.71 | 0.49945 |
Target: 5'- uGCGCGGCGCGcUGA--AGGGCGugcgcgacGGCAu -3' miRNA: 3'- -CGUGCCGUGCaACUugUCCUGU--------CCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 28918 | 0.7 | 0.607015 |
Target: 5'- cGCGauccaGGCACG----GCAGGAaCAGGCAg -3' miRNA: 3'- -CGUg----CCGUGCaacuUGUCCU-GUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 62201 | 0.69 | 0.640082 |
Target: 5'- -aACGGCACGUUGAugccgaucuuucucuCGGGAUugcccucguuccaGGGCGu -3' miRNA: 3'- cgUGCCGUGCAACUu--------------GUCCUG-------------UCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 20593 | 0.68 | 0.673083 |
Target: 5'- cGCGCGGCGCGcc--GCAGGGCuguuGCGu -3' miRNA: 3'- -CGUGCCGUGCaacuUGUCCUGuc--CGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 43848 | 0.68 | 0.694907 |
Target: 5'- cGCGCGGCgguGCGcc-GGCAGGACcucGGCGc -3' miRNA: 3'- -CGUGCCG---UGCaacUUGUCCUGu--CCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 24223 | 0.68 | 0.716488 |
Target: 5'- uGCGcCGGCACGccgauuggUUGAGuaagauCGGGAgGGGCGa -3' miRNA: 3'- -CGU-GCCGUGC--------AACUU------GUCCUgUCCGU- -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 51766 | 0.67 | 0.726095 |
Target: 5'- uGCGCaGCACGggaUGAccgaugcGCAGGucCAGGCu -3' miRNA: 3'- -CGUGcCGUGCa--ACU-------UGUCCu-GUCCGu -5' |
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23912 | 3' | -54 | NC_005262.1 | + | 50887 | 0.67 | 0.735626 |
Target: 5'- cGCACGGCGCGccgucaaucaccUGAacgcGCAGGGCAucGaGCAc -3' miRNA: 3'- -CGUGCCGUGCa-----------ACU----UGUCCUGU--C-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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